Agrostemma githago
Agit Caryophyllaceae Caryophyllales

Agrostemma githago

1735 Mb Genome Size
24 Chromosomes
Chromosome Assembly Level
74.6 Mb N50
Caryophyllaceae Family
2023 Release Year
Taxonomic Classification
Kingdom Plantae Class Magnoliopsida Order Caryophyllales Family Caryophyllaceae
Darwin Tree of Life · dcAgrGith1.1 · GCA_958450325.1 · 2023-07-18
Polyploidy History (PhyloWGD)
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Species Notes
Description
Agrostemma githago, the common corn-cockle, is a herbaceous annual flowering plant a member of Caryophyllaceae, also called the pink family or the carnation family of plants. The name of this genus is derived from Greek: agros (ἀγρός) “field” and stemma (στέμμα) “garland, crown."
Downloads
Protein sequences
FASTA (.pep) — amino acid sequences for all annotated genes
Gene coordinates
BED format — chromosomal positions for MCScanX input
Coding sequences
FASTA (.cds) — nucleotide CDS for Ka/Ks analysis
Gene type annotations
TSV — gene duplication classifications
CDS not in local archive — search on NCBI
Grayed items are not yet available in local archive.
Analysis Tools
Synteny & Collinearity
MCScanX Dotplot Synteny Network SynVisio
Evolutionary Analysis
Ks / Riparian
Sequence Search
BLAST Locus Search
External Databases
Related Literature (genome, WGD & evolution)
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