Avena
Aatc Poaceae Poales

Avena

3685 Mb Genome Size
7 Chromosomes
Chromosome Assembly Level
513.2 Mb N50
Poaceae Family
2022 Release Year
Taxonomic Classification
Kingdom Plantae Class Liliopsida Order Poales Family Poaceae
Ensembl Plants · Avena_atlantica_CC7277_v1_assembly · GCA_910589765.1 · 2022-09-22
Polyploidy History (PhyloWGD)
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Species Notes
Description
Avena is a genus of Eurasian and African plants in the grass family. Collectively known as the oats, they include some species which have been cultivated for thousands of years as a food source for humans and livestock. They are widespread throughout Europe, Asia and northwest Africa.
Wikipedia
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Image credit
© Wikimedia Commons — Avena
Downloads
Protein sequences
FASTA (.pep) — amino acid sequences for all annotated genes
Gene coordinates
BED format — chromosomal positions for MCScanX input
Coding sequences
FASTA (.cds) — nucleotide CDS for Ka/Ks analysis
Gene type annotations
TSV — gene duplication classifications
CDS not in local archive — search on NCBI
Grayed items are not yet available in local archive.
Analysis Tools
Synteny & Collinearity
MCScanX Dotplot Synteny Network SynVisio
Evolutionary Analysis
Ks / Riparian
Sequence Search
BLAST Locus Search
External Databases
Related Literature (genome, WGD & evolution)
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