Arabidopsis arenosa
Aare Brassicaceae Brassicales

Arabidopsis arenosa

Arabidopsis arenosa

Brassicaceae Family
Taxonomic Classification
Kingdom Plantae Class Magnoliopsida Order Brassicales Family Brassicaceae
Polyploidy History (PhyloWGD)
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Species Notes
Common name(s)
Arabidopsis arenosa
Description
Arabidopsis arenosa, the sand rock-cress, is a species of flowering plant in the family Brassicaceae. It is found mostly in Central Europe in both a diploid and an autotetraploid form. This sets it apart from the other, mostly diploid, Arabidopsis species including the closely related Arabidopsis lyrata or Arabidopsis thaliana, the model plant species.
Wikipedia
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Image credit
Mikhail Prigarov · © Mikhail Prigarov · CC BY-NC
Downloads
Protein sequences
FASTA (.pep) — amino acid sequences for all annotated genes
Gene coordinates
BED format — chromosomal positions for MCScanX input
Coding sequences
FASTA (.cds) — nucleotide CDS for Ka/Ks analysis
Gene type annotations
TSV — gene duplication classifications
CDS not in local archive — search on NCBI
Grayed items are not yet available in local archive.
Analysis Tools
Synteny & Collinearity
MCScanX Dotplot Synteny Network SynVisio
Evolutionary Analysis
Ks / Riparian
Sequence Search
BLAST Locus Search
External Databases
Related Literature (genome, WGD & evolution)
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