Avena sativa OT3098
Aaeg Poaceae Poales

Avena sativa OT3098

42 2n Chromosomes
Poaceae Family
Taxonomic Classification
Kingdom Plantae Phylum Angiosperms (Monocots) Class Liliopsida Order Poales Family Poaceae
Genome & Ploidy
2n
42 chromosomes
Polyploidy History (PhyloWGD)
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Species Notes
Description
The oat, sometimes called the common oat, is a species of cereal grass (Avena) grown for fodder and for its seed, which is known by the same name. Oats appear to have been domesticated as a secondary crop, as their seeds resembled those of other cereals closely enough for them to be included by early cultivators. Oats tolerate cold winters less well than cereals such as wheat, barley, and rye, but need less summer heat and more rain, making them important in areas such as Northwest Europe that have cool, wet summers.
Data source
build_pgdd_species_jsons.py
Wikipedia
View article
Image credit
© Wikimedia Commons — Oat
Downloads
Protein sequences
FASTA (.pep) — amino acid sequences for all annotated genes
Gene coordinates
BED format — chromosomal positions for MCScanX input
Coding sequences
FASTA (.cds) — nucleotide CDS for Ka/Ks analysis
Gene type annotations
TSV — gene duplication classifications
CDS not in local archive — search on NCBI
Grayed items are not yet available in local archive.
Analysis Tools
Synteny & Collinearity
MCScanX Dotplot Synteny Network SynVisio
Evolutionary Analysis
Ks / Riparian
Sequence Search
BLAST Locus Search
External Databases
Related Literature (genome, WGD & evolution)
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