Locus Search

Obtain a report of related syntenic regions in multiple species by locus identifier
You can choose e.g. AT1G25460, GRMZM2G000039 ppa005930m



Display range :

All intra/cross-species blocks for Brara.G03320, graphs and tables display ±100kb region. Blue arrows are other anchor genes in the region, red is query locus.

[1] Brara.G03320 is contained in a small block (Score 274.0, E-value 0.0) with 7 anchors
Export to pdf
Order within BlockLocus 1Annotation 1Locus 2Annotation 2KaKs
1Brara.B02143Brara.G033110.020.30
2Brara.B02144Brara.G033150.110.39
3Brara.B02146Brara.G033160.080.44
4Brara.B02147Brara.G033200.100.58
5Brara.B02149Brara.G033210.160.51
6Brara.B02150Brara.G033240.070.33
7Brara.B02154Brara.G033320.140.45


[2] Brara.G03320 is contained in a huge block (Score 11071.0, E-value 0.0) with 279 anchors
Export to pdf
Order within BlockLocus 1Annotation 1Locus 2Annotation 2KaKs
1AT1G74770Brara.G033000.110.55
2AT1G74790Brara.G033010.060.35
3AT1G74800Brara.G033020.040.57
4AT1G74830Brara.G033030.090.47
5AT1G74840Brara.G033040.130.56
6AT1G74850Brara.G033050.030.53
7AT1G74860Brara.G033060.160.43
8AT1G74870Brara.G033070.210.60
9AT1G74880Brara.G033080.050.29
10AT1G74890Brara.G033090.110.39
11AT1G74900Brara.G033100.090.89
12AT1G74910Brara.G033110.030.26
13AT1G74930Brara.G033130.160.65
14AT1G74940Brara.G033140.110.43
15AT1G74950Brara.G033150.130.51
16AT1G74960Brara.G033160.050.43
17AT1G74970Brara.G033170.070.87
18AT1G74990Brara.G033180.150.56
19AT1G75000Brara.G033190.090.48
20AT1G75010Brara.G033200.070.33
21AT1G75030Brara.G033220.140.54
22AT1G75060Brara.G033240.130.40
23AT1G75080Brara.G033250.060.68
24AT1G75090Brara.G033260.100.46
25AT1G75100Brara.G033270.140.42
26AT1G75130Brara.G033280.100.51
27AT1G75150Brara.G033290.130.42
28AT1G75170Brara.G033310.050.52
29AT1G75180Brara.G033320.080.64
30AT1G75200Brara.G033340.070.58
31AT1G75210Brara.G033350.070.78
32AT1G75220Brara.G033360.020.37
33AT1G75240Brara.G033370.070.51
34AT1G75250Brara.G033380.070.42
35AT1G75260Brara.G033390.320.69
36AT1G75310Brara.G033420.160.38


[3] Brara.G03320 is contained in a huge block (Score 12726.0, E-value 0.0) with 321 anchors
Export to pdf
Order within BlockLocus 1Annotation 1Locus 2Annotation 2KaKs
116037872Brara.G033000.110.54
216051225Brara.G033010.050.37
316047198Brara.G033020.040.60
416048201Brara.G033030.100.52
516033848Brara.G033040.150.52
616043136Brara.G033050.030.51
716052476Brara.G033060.150.46
816061560Brara.G033070.250.73
916033838Brara.G033080.050.26
1016058462Brara.G033090.120.30
1116053588Brara.G033100.090.94
1216047150Brara.G033110.030.25
1316037367Brara.G033130.140.57
1416036759Brara.G033140.100.47
1516055898Brara.G033150.120.45
1616049805Brara.G033160.050.45
1716041421Brara.G033170.070.84
1816050123Brara.G033180.130.53
1916062978Brara.G033190.080.47
2016058573Brara.G033200.080.31
2116066322Brara.G033240.120.49
2216043039Brara.G033250.060.66
2316061519Brara.G033270.140.42
2416049332Brara.G033280.100.45
2516059241Brara.G033290.130.45
2616051967Brara.G033310.050.57
2716035156Brara.G033320.090.57
2816065548Brara.G033340.070.55
2916057594Brara.G033350.070.80
3016048350Brara.G033360.030.35


[4] Brara.G03320 is contained in a huge block (Score 9736.0, E-value 2e-62) with 246 anchors
Export to pdf
Order within BlockLocus 1Annotation 1Locus 2Annotation 2KaKs
1Bo6g118970Brara.G033010.090.27
2Bo6g119010Brara.G033040.000.07
3Bo6g119020Brara.G033050.010.12
4Bo6g119040Brara.G033060.050.07
5Bo6g119050Brara.G033070.020.12
6Bo6g119060Brara.G033080.010.06
7Bo6g119100Brara.G033100.020.12
8Bo6g119130Brara.G033140.030.03
9Bo6g119140Brara.G033150.030.09
10Bo6g119160Brara.G033170.010.10
11Bo6g119170Brara.G033180.020.19
12Bo6g119180Brara.G033190.010.09
13Bo6g119190Brara.G033200.030.14
14Bo6g119250Brara.G033260.020.15
15Bo6g119260Brara.G033270.040.11
16Bo6g119270Brara.G033280.020.13
17Bo6g119280Brara.G033290.040.16
18Bo6g119290Brara.G033300.010.09
19Bo6g119340Brara.G033330.040.05
20Bo6g119350Brara.G033340.010.14
21Bo6g119360Brara.G033350.020.14
22Bo6g119380Brara.G033370.010.09


[5] Brara.G03320 is contained in a huge block (Score 3234.0, E-value 6e-86) with 87 anchors
Export to pdf
Order within BlockLocus 1Annotation 1Locus 2Annotation 2KaKs
1Bo2g082370Brara.G033040.120.38
2Bo2g082380Brara.G033070.300.52
3Bo2g082410Brara.G033150.110.39
4Bo2g082440Brara.G033200.180.44


[6] Brara.G03320 is contained in a huge block (Score 11968.0, E-value 0.0) with 302 anchors
Export to pdf
Order within BlockLocus 1Annotation 1Locus 2Annotation 2KaKs
1Brara.G03300Carubv10021919m0.120.54
2Brara.G03302Carubv10019922m0.040.68
3Brara.G03303Carubv10021488m0.110.55
4Brara.G03304Carubv10020668m0.110.46
5Brara.G03305Carubv10019779m0.040.57
6Brara.G03306Carubv10020445m0.170.41
7Brara.G03307Carubv10020696m0.310.99
8Brara.G03308Carubv10020988m0.040.38
9Brara.G03309Carubv10020975m0.150.42
10Brara.G03310Carubv10022126m0.110.89
11Brara.G03311Carubv10020370m0.030.29
12Brara.G03312Carubv10020176m0.250.49
13Brara.G03313Carubv10020965m0.150.68
14Brara.G03314Carubv10020923m0.130.43
15Brara.G03315Carubv10020844m0.140.41
16Brara.G03316Carubv10020101m0.050.45
17Brara.G03317Carubv10020951m0.060.80
18Brara.G03318Carubv10022226m0.210.67
19Brara.G03319Carubv10020660m0.090.64
20Brara.G03320Carubv10019862m0.090.35
21Brara.G03324Carubv10020787m0.140.50
22Brara.G03325Carubv10020629m0.060.67
23Brara.G03326Carubv10022002m0.080.57
24Brara.G03327Carubv10019884m0.140.52
25Brara.G03328Carubv10022189m0.130.41
26Brara.G03329Carubv10019820m0.140.42
27Brara.G03332Carubv10020666m0.080.63
28Brara.G03334Carubv10019936m0.070.66
29Brara.G03335Carubv10019957m0.070.75
30Brara.G03336Carubv10020200m0.020.34
31Brara.G03337Carubv10020705m0.060.59
32Brara.G03338Carubv10021157m0.080.35
33Brara.G03339Carubv10020148m0.310.68



 Print this page