Locus Search

Obtain a report of related syntenic regions in multiple species by locus identifier
You can choose e.g. AT1G25460, GRMZM2G000039 ppa005930m



Display range :

All intra/cross-species blocks for Bo6g119250, graphs and tables display ±100kb region. Blue arrows are other anchor genes in the region, red is query locus.

[1] Bo6g119250 is contained in a large block (Score 1194.0, E-value 4e-101) with 33 anchors
Export to pdf
Order within BlockLocus 1Annotation 1Locus 2Annotation 2KaKs
2Bo6g119180GSVIVT010096440010.521.04
3Bo6g119240GSVIVT010096500010.152.11
4Bo6g119250GSVIVT010096570010.373.27


[2] Bo6g119250 is contained in a huge block (Score 2640.0, E-value 2e-100) with 70 anchors
Export to pdf
Order within BlockLocus 1Annotation 1Locus 2Annotation 2KaKs
2Bo6g119170Thecc1EG0339810.340.00
3Bo6g119180Thecc1EG0339820.222.11
4Bo6g119200Thecc1EG0339840.262.29
5Bo6g119240Thecc1EG0339880.151.54
6Bo6g119250Thecc1EG0339950.292.36
7Bo6g119260Thecc1EG0339990.621.68
8Bo6g119280Thecc1EG0340130.491.74


[3] Bo6g119250 is contained in a huge block (Score 3439.0, E-value 6e-101) with 90 anchors
Export to pdf
Order within BlockLocus 1Annotation 1Locus 2Annotation 2KaKs
2Bo6g11917030170.m013988 putative0.301.91
3Bo6g11918030170.m013989 hypothetical protein0.260.00
4Bo6g11920030170.m013991 precursor, putative0.280.00
5Bo6g11924030170.m013994 hypothetical protein0.181.51
6Bo6g11925030170.m014000 glycosylase, putative0.330.00
7Bo6g11926030170.m014005 shock protein binding protein, putative0.532.47
8Bo6g11928030170.m014015 hypothetical protein0.642.11


[4] Bo6g119250 is contained in a small block (Score 207.0, E-value 6e-103) with 6 anchors
Export to pdf
Order within BlockLocus 1Annotation 1Locus 2Annotation 2KaKs
2Bo6g119180Potri.014G0405000.000.00
3Bo6g119240Potri.014G0412000.202.17
4Bo6g119250Potri.014G0417000.000.00
5Bo6g119270Potri.014G0430000.372.05


[5] Bo6g119250 is contained in a huge block (Score 1964.0, E-value 2e-41) with 52 anchors
Export to pdf
Order within BlockLocus 1Annotation 1Locus 2Annotation 2KaKs
1Bo6g119170ppa009193m0.321.78
2Bo6g119180ppa009859m0.401.08
3Bo6g119200ppa010458m0.241.45
4Bo6g119240ppa011104m0.170.00
5Bo6g119250ppa026563m0.352.01
6Bo6g119260ppa002474m0.802.89
7Bo6g119280ppa020291m0.742.28


[6] Bo6g119250 is contained in a large block (Score 999.0, E-value 4e-43) with 27 anchors
Export to pdf
Order within BlockLocus 1Annotation 1Locus 2Annotation 2KaKs
1Bo6g119170Glyma.06G0345000.312.05
2Bo6g119240Glyma.06G0341000.181.63
3Bo6g119250Glyma.06G0339000.380.00
4Bo6g119280Glyma.06G0331000.652.11


[7] Bo6g119250 is contained in a large block (Score 916.0, E-value 3e-41) with 25 anchors
Export to pdf
Order within BlockLocus 1Annotation 1Locus 2Annotation 2KaKs
1Bo6g119170Glyma.04G0345000.302.93
2Bo6g119240Glyma.04G0339000.181.71
3Bo6g119250Glyma.04G0337000.380.00
4Bo6g119280Glyma.04G0331000.612.55


[8] Bo6g119250 is contained in a large block (Score 739.0, E-value 1e-41) with 20 anchors
Export to pdf
Order within BlockLocus 1Annotation 1Locus 2Annotation 2KaKs
1Bo6g119170mrna150810.341.91
2Bo6g119180mrna150820.221.22
3Bo6g119200mrna150860.251.39
4Bo6g119240mrna150930.191.75
5Bo6g119250mrna151060.394.50
6Bo6g119260mrna151130.612.19
7Bo6g119270mrna151170.372.08
8Bo6g119280mrna151240.882.76


[9] Bo6g119250 is contained in a large block (Score 1365.0, E-value 2e-110) with 37 anchors
Export to pdf
Order within BlockLocus 1Annotation 1Locus 2Annotation 2KaKs
2Bo6g119250Eucgr.F015420.392.21
3Bo6g119270Eucgr.F015480.332.79


[10] Bo6g119250 is contained in a small block (Score 267.0, E-value 6e-107) with 7 anchors
Export to pdf
Order within BlockLocus 1Annotation 1Locus 2Annotation 2KaKs
2Bo6g119170evm.TU.supercontig_64.430.000.00
3Bo6g119200evm.TU.supercontig_64.450.231.72
4Bo6g119240evm.TU.supercontig_64.500.161.27
5Bo6g119250evm.TU.supercontig_64.550.191.18
6Bo6g119260evm.TU.supercontig_64.610.552.13


[12] Bo6g119250 is contained in a huge block (Score 9736.0, E-value 2e-62) with 246 anchors
Export to pdf
Order within BlockLocus 1Annotation 1Locus 2Annotation 2KaKs
2Bo6g119010Brara.G033040.000.07
3Bo6g119020Brara.G033050.010.12
4Bo6g119040Brara.G033060.050.07
5Bo6g119050Brara.G033070.020.12
6Bo6g119060Brara.G033080.010.06
7Bo6g119100Brara.G033100.020.12
8Bo6g119130Brara.G033140.030.03
9Bo6g119140Brara.G033150.030.09
10Bo6g119160Brara.G033170.010.10
11Bo6g119170Brara.G033180.020.19
12Bo6g119180Brara.G033190.010.09
13Bo6g119190Brara.G033200.030.14
14Bo6g119250Brara.G033260.020.15
15Bo6g119260Brara.G033270.040.11
16Bo6g119270Brara.G033280.020.13
17Bo6g119280Brara.G033290.040.16
18Bo6g119290Brara.G033300.010.09
19Bo6g119340Brara.G033330.040.05
20Bo6g119350Brara.G033340.010.14
21Bo6g119360Brara.G033350.020.14
22Bo6g119380Brara.G033370.010.09
23Bo6g119400Brara.G033390.030.10


[13] Bo6g119250 is contained in a huge block (Score 28644.0, E-value 0.0) with 726 anchors
Export to pdf
Order within BlockLocus 1Annotation 1Locus 2Annotation 2KaKs
460AT1G74800Bo6g1189900.050.55
461AT1G74830Bo6g1190000.100.46
462AT1G74840Bo6g1190100.130.50
463AT1G74860Bo6g1190400.160.41
464AT1G74870Bo6g1190500.220.59
465AT1G74880Bo6g1190600.050.30
466AT1G74890Bo6g1190700.120.44
467AT1G74900Bo6g1191000.090.92
468AT1G74910Bo6g1191100.020.26
469AT1G74930Bo6g1191200.160.58
470AT1G74940Bo6g1191300.120.44
471AT1G74950Bo6g1191400.130.50
472AT1G74960Bo6g1191500.060.41
473AT1G74970Bo6g1191600.060.82
474AT1G74990Bo6g1191700.170.69
475AT1G75000Bo6g1191800.070.50
476AT1G75010Bo6g1191900.080.33
477AT1G75030Bo6g1192100.220.52
478AT1G75040Bo6g1192200.270.67
479AT1G75060Bo6g1192400.130.34
480AT1G75090Bo6g1192500.110.43
481AT1G75100Bo6g1192600.140.43
482AT1G75130Bo6g1192700.100.54
483AT1G75150Bo6g1192800.140.41
484AT1G75170Bo6g1193000.040.55
485AT1G75180Bo6g1193100.110.71
486AT1G75200Bo6g1193500.060.57
487AT1G75210Bo6g1193600.080.78
488AT1G75220Bo6g1193700.020.40
489AT1G75240Bo6g1193800.080.43
490AT1G75250Bo6g1193900.040.35
491AT1G75260Bo6g1194000.210.49


[14] Bo6g119250 is contained in a huge block (Score 28197.0, E-value 3e-51) with 716 anchors
Export to pdf
Order within BlockLocus 1Annotation 1Locus 2Annotation 2KaKs
425Bo6g119000Carubv10021488m0.110.49
426Bo6g119010Carubv10020668m0.110.40
427Bo6g119020Carubv10019779m0.040.62
428Bo6g119040Carubv10020445m0.180.42
429Bo6g119050Carubv10020696m0.320.91
430Bo6g119060Carubv10020988m0.030.39
431Bo6g119070Carubv10020975m0.150.43
432Bo6g119100Carubv10022126m0.100.85
433Bo6g119110Carubv10020370m0.030.28
434Bo6g119120Carubv10020965m0.170.67
435Bo6g119130Carubv10020923m0.130.48
436Bo6g119140Carubv10020844m0.140.43
437Bo6g119150Carubv10020101m0.060.44
438Bo6g119160Carubv10020951m0.060.77
439Bo6g119170Carubv10022226m0.180.67
440Bo6g119180Carubv10020660m0.070.59
441Bo6g119190Carubv10019862m0.100.33
442Bo6g119240Carubv10020787m0.120.43
443Bo6g119250Carubv10022002m0.080.57
444Bo6g119260Carubv10019884m0.140.51
445Bo6g119270Carubv10022189m0.140.47
446Bo6g119280Carubv10019820m0.140.41
447Bo6g119310Carubv10020666m0.110.72
448Bo6g119350Carubv10019936m0.060.61
449Bo6g119360Carubv10019957m0.080.74
450Bo6g119370Carubv10020200m0.020.38
451Bo6g119380Carubv10020705m0.070.51
452Bo6g119390Carubv10021157m0.110.32
453Bo6g119400Carubv10020148m0.280.65


[15] Bo6g119250 is contained in a huge block (Score 3183.0, E-value 9e-73) with 83 anchors
Export to pdf
Order within BlockLocus 1Annotation 1Locus 2Annotation 2KaKs
2Bo6g119170orange1.1g027010m0.000.00
3Bo6g119180orange1.1g043004m0.222.25
4Bo6g119200orange1.1g026001m0.272.04
5Bo6g119240orange1.1g027380m0.171.63
6Bo6g119250orange1.1g020903m0.000.00
7Bo6g119260orange1.1g004595m0.551.88
8Bo6g119270orange1.1g012459m0.342.03
9Bo6g119280orange1.1g043494m0.612.31


[16] Bo6g119250 is contained in a large block (Score 758.0, E-value 5e-98) with 20 anchors
Export to pdf
Order within BlockLocus 1Annotation 1Locus 2Annotation 2KaKs
1Bo6g119160Cla0207370.163.17
2Bo6g119240Cla0207420.181.68
3Bo6g119250Cla0207430.410.00
4Bo6g119270Cla0207480.382.38
5Bo6g119280Cla0207520.702.00


[11] Bo6g119250 is contained in a large block (Score 1557.0, E-value 4e-86) with 41 anchors
Export to pdf
Order within BlockLocus 1Annotation 1Locus 2Annotation 2KaKs
2Bo6g119200634100.302.97
3Bo6g119240633850.201.36
4Bo6g119250633780.413.69
5Bo6g119280633350.632.06
6Bo6g119360632820.220.00


[17] Bo6g119250 is contained in a large block (Score 484.0, E-value 2e-26) with 14 anchors
Export to pdf
Order within BlockLocus 1Annotation 1Locus 2Annotation 2KaKs
5Bo6g119250NNU_006473-RA0.350.00


[18] Bo6g119250 is contained in a large block (Score 592.0, E-value 2e-123) with 16 anchors
Export to pdf
Order within BlockLocus 1Annotation 1Locus 2Annotation 2KaKs
1Bo6g119180Pm0057750.201.04
2Bo6g119200Pm0057770.241.56
3Bo6g119240Pm0057820.180.00
4Bo6g119250Pm0057860.342.04
5Bo6g119260Pm0057910.623.91
6Bo6g119280Pm0057990.662.23



 Print this page