Locus Search

Obtain a report of related syntenic regions in multiple species by locus identifier
You can choose e.g. AT1G25460, GRMZM2G000039 ppa005930m



Display range :

All intra/cross-species blocks for AT5G54200, graphs and tables display ±100kb region. Blue arrows are other anchor genes in the region, red is query locus.

[1] AT5G54200 is contained in a large block (Score 413.0, E-value 4e-136) with 12 anchors
Export to pdf
Order within BlockLocus 1Annotation 1Locus 2Annotation 2KaKs
2AT5G54190PGSC0003DMC4000434010.000.00
3AT5G54200PGSC0003DMC4000433980.311.70
4AT5G54310PGSC0003DMC4000434370.391.99


[2] AT5G54200 is contained in a huge block (Score 2180.0, E-value 0.0) with 59 anchors
Export to pdf
Order within BlockLocus 1Annotation 1Locus 2Annotation 2KaKs
1AT5G54190ppa006788m0.101.71
2AT5G54200ppa001338m0.291.96


[3] AT5G54200 is contained in a large block (Score 1350.0, E-value 7e-145) with 36 anchors
Export to pdf
Order within BlockLocus 1Annotation 1Locus 2Annotation 2KaKs
2AT5G54200Eucgr.F033370.282.54
3AT5G54310Eucgr.F033530.321.72


[5] AT5G54200 is contained in a large block (Score 584.0, E-value 8e-08) with 16 anchors
Export to pdf
Order within BlockLocus 1Annotation 1Locus 2Annotation 2KaKs
2AT5G54200Glyma.13G2794000.293.65


[6] AT5G54200 is contained in a large block (Score 834.0, E-value 2e-41) with 23 anchors
Export to pdf
Order within BlockLocus 1Annotation 1Locus 2Annotation 2KaKs
3AT5G54190Glyma.12G1504000.151.54
4AT5G54200Glyma.12G1503000.342.03


[7] AT5G54200 is contained in a huge block (Score 18684.0, E-value 0.0) with 479 anchors
Export to pdf
Order within BlockLocus 1Annotation 1Locus 2Annotation 2KaKs
144AT5G54160Bo9g1151000.050.40
145AT5G54170Bo9g1151100.090.38
146AT5G54180Bo9g1151300.070.44
147AT5G54190Bo9g1151400.060.41
148AT5G54200Bo9g1151500.070.54
149AT5G54240Bo9g1151600.050.32
150AT5G54250Bo9g1161600.040.42
151AT5G54260Bo9g1161900.030.23
152AT5G54280Bo9g1162000.060.34


[8] AT5G54200 is contained in a huge block (Score 12128.0, E-value 7e-148) with 312 anchors
Export to pdf
Order within BlockLocus 1Annotation 1Locus 2Annotation 2KaKs
99AT5G54095Bo3g0223000.220.45
100AT5G54100Bo3g0222900.150.51
101AT5G54148Bo3g0222800.211.13
102AT5G54160Bo3g0222700.040.49
103AT5G54170Bo3g0222600.090.35
104AT5G54200Bo3g0222500.080.55
105AT5G54215Bo3g0222300.520.92
106AT5G54225Bo3g0222200.220.52
107AT5G54230Bo3g0222100.080.42
108AT5G54290Bo3g0221900.180.44
109AT5G54300Bo3g0221800.220.70
110AT5G54310Bo3g0221700.080.28
111AT5G54370Bo3g0221500.050.30


[9] AT5G54200 is contained in a large block (Score 378.0, E-value 0.0) with 11 anchors
Export to pdf
Order within BlockLocus 1Annotation 1Locus 2Annotation 2KaKs
1AT5G54190orange1.1g015844m0.101.93
2AT5G54200orange1.1g002407m0.241.64


[4] AT5G54200 is contained in a large block (Score 486.0, E-value 0.0) with 13 anchors
Export to pdf
Order within BlockLocus 1Annotation 1Locus 2Annotation 2KaKs
1AT5G541901382540.112.37
2AT5G542001382460.301.80


[10] AT5G54200 is contained in a large block (Score 399.0, E-value 0.0) with 12 anchors
Export to pdf
Order within BlockLocus 1Annotation 1Locus 2Annotation 2KaKs
1AT5G54190Pm0115910.111.79
2AT5G54200Pm0115930.372.05



 Print this page