Locus Search

Obtain a report of related syntenic regions in multiple species by locus identifier
You can choose e.g. AT1G25460, GRMZM2G000039 ppa005930m



Display range :

All intra/cross-species blocks for AT5G49910, graphs and tables display ±100kb region. Blue arrows are other anchor genes in the region, red is query locus.

[1] AT5G49910 is contained in a large block (Score 1669.0, E-value 3e-19) with 46 anchors
Export to pdf
Order within BlockLocus 1Annotation 1Locus 2Annotation 2KaKs
3AT4G24280AT5G499100.050.70
4AT4G24330AT5G499450.180.99
5AT4G24390AT5G499800.130.81


[2] AT5G49910 is contained in a small block (Score 219.0, E-value 0.0) with 7 anchors
Export to pdf
Order within BlockLocus 1Annotation 1Locus 2Annotation 2KaKs
5AT5G49910PGSC0003DMC4000431440.101.75
6AT5G49920PGSC0003DMC4000692590.000.00


[3] AT5G49910 is contained in a large block (Score 1316.0, E-value 0.0) with 37 anchors
Export to pdf
Order within BlockLocus 1Annotation 1Locus 2Annotation 2KaKs
2AT5G49910Brara.A014360.040.80
3AT5G49945Brara.A014400.191.21


[4] AT5G49910 is contained in a small block (Score 367.0, E-value 2e-165) with 10 anchors
Export to pdf
Order within BlockLocus 1Annotation 1Locus 2Annotation 2KaKs
9AT5G49910Potri.004G2244000.101.81
10AT5G49960Potri.004G2234000.201.35


[5] AT5G49910 is contained in a small block (Score 272.0, E-value 0.0) with 8 anchors
Export to pdf
Order within BlockLocus 1Annotation 1Locus 2Annotation 2KaKs
7AT5G49910Solyc01g103450.20.101.64


[6] AT5G49910 is contained in a large block (Score 944.0, E-value 0.0) with 27 anchors
Export to pdf
Order within BlockLocus 1Annotation 1Locus 2Annotation 2KaKs
2AT5G49910Bo7g1094900.060.88
3AT5G49945Bo7g1095000.211.05


[7] AT5G49910 is contained in a large block (Score 1269.0, E-value 0.0) with 36 anchors
Export to pdf
Order within BlockLocus 1Annotation 1Locus 2Annotation 2KaKs
2AT5G49910Bo1g0378400.050.85
3AT5G49945Bo1g0388900.181.26


[8] AT5G49910 is contained in a small block (Score 364.0, E-value 0.0) with 10 anchors
Export to pdf
Order within BlockLocus 1Annotation 1Locus 2Annotation 2KaKs
9AT5G49910Pbr026580.10.091.41



 Print this page