Locus Search

Obtain a report of related syntenic regions in multiple species by locus identifier
You can choose e.g. AT1G25460, GRMZM2G000039 ppa005930m



Display range :

All intra/cross-species blocks for AT5G25340, graphs and tables display ±100kb region. Blue arrows are other anchor genes in the region, red is query locus.

[1] AT5G25340 is contained in a small block (Score 215.0, E-value 6e-19) with 6 anchors
Export to pdf
Order within BlockLocus 1Annotation 1Locus 2Annotation 2KaKs
4AT5G25280PGSC0003DMC4000496100.352.08
5AT5G25340PGSC0003DMC4000496260.733.15
6AT5G25360PGSC0003DMC4000497030.301.74


[2] AT5G25340 is contained in a small block (Score 225.0, E-value 4e-52) with 6 anchors
Export to pdf
Order within BlockLocus 1Annotation 1Locus 2Annotation 2KaKs
3AT5G25280PGSC0003DMC4000452920.371.69
4AT5G25340PGSC0003DMC4000355470.411.67
5AT5G25350PGSC0003DMC4000355440.982.64
6AT5G25360PGSC0003DMC4000355410.232.39


[3] AT5G25340 is contained in a large block (Score 829.0, E-value 5e-77) with 23 anchors
Export to pdf
Order within BlockLocus 1Annotation 1Locus 2Annotation 2KaKs
18AT5G2534029848.m004614 protein0.581.76
19AT5G2535029848.m004629 plant, putative0.291.87
20AT5G2536029848.m004630 hypothetical protein0.223.41
21AT5G2539029848.m004632 binding protein, putative0.270.00


[4] AT5G25340 is contained in a large block (Score 820.0, E-value 1e-14) with 22 anchors
Export to pdf
Order within BlockLocus 1Annotation 1Locus 2Annotation 2KaKs
13AT5G25340Phvul.009G0924000.662.31
14AT5G25350Phvul.009G0932000.382.44


[5] AT5G25340 is contained in a large block (Score 380.0, E-value 2e-13) with 11 anchors
Export to pdf
Order within BlockLocus 1Annotation 1Locus 2Annotation 2KaKs
7AT5G25340Phvul.001G0508000.541.86
8AT5G25350Phvul.001G0513000.322.42


[6] AT5G25340 is contained in a small block (Score 225.0, E-value 1e-29) with 7 anchors
Export to pdf
Order within BlockLocus 1Annotation 1Locus 2Annotation 2KaKs
1AT5G25340ppa020239m0.583.08


[7] AT5G25340 is contained in a small block (Score 356.0, E-value 1e-173) with 10 anchors
Export to pdf
Order within BlockLocus 1Annotation 1Locus 2Annotation 2KaKs
5AT5G25340ppb018825m0.390.00
6AT5G25350ppa002673m0.322.06
7AT5G25360ppa012337m0.241.21
8AT5G25390ppa023908m0.300.00


[8] AT5G25340 is contained in a large block (Score 413.0, E-value 2e-100) with 12 anchors
Export to pdf
Order within BlockLocus 1Annotation 1Locus 2Annotation 2KaKs
9AT5G25320Gorai.001G0349000.000.00
10AT5G25340Gorai.001G0343000.602.09
11AT5G25350Gorai.001G0334000.351.89
12AT5G25390Gorai.001G0332000.000.00


[9] AT5G25340 is contained in a small block (Score 268.0, E-value 0.0) with 8 anchors
Export to pdf
Order within BlockLocus 1Annotation 1Locus 2Annotation 2KaKs
5AT5G25340Eucgr.C027660.590.00


[10] AT5G25340 is contained in a small block (Score 368.0, E-value 9e-28) with 10 anchors
Export to pdf
Order within BlockLocus 1Annotation 1Locus 2Annotation 2KaKs
1AT5G25340169765070.730.00
2AT5G25350169765200.332.03
3AT5G25390169765210.292.60
4AT5G25400169765260.091.84


[11] AT5G25340 is contained in a large block (Score 390.0, E-value 2e-13) with 11 anchors
Export to pdf
Order within BlockLocus 1Annotation 1Locus 2Annotation 2KaKs
8AT5G25210169735970.791.73
9AT5G25220169736010.220.00
10AT5G25280169736170.361.97
11AT5G25340169736201.581.83


[14] AT5G25340 is contained in a huge block (Score 7427.0, E-value 2e-68) with 188 anchors
Export to pdf
Order within BlockLocus 1Annotation 1Locus 2Annotation 2KaKs
113AT5G25170Brara.F027200.030.50
114AT5G25190Brara.F027210.080.52
115AT5G25210Brara.F027220.270.73
116AT5G25220Brara.F027230.030.49
117AT5G25270Brara.F027250.100.32
118AT5G25280Brara.F027270.101.47
119AT5G25330Brara.F027320.090.52
120AT5G25340Brara.F027330.110.49
121AT5G25350Brara.F027340.080.68
122AT5G25360Brara.F027350.050.28
123AT5G25370Brara.F027360.060.48
124AT5G25390Brara.F027370.110.35
125AT5G25470Brara.F027420.290.60
126AT5G25480Brara.F027430.070.36
127AT5G25490Brara.F027440.090.65
128AT5G25500Brara.F027450.130.54
129AT5G25510Brara.F027460.071.03
130AT5G25520Brara.F027470.160.45
131AT5G25540Brara.F027490.230.59


[15] AT5G25340 is contained in a huge block (Score 2528.0, E-value 0.0) with 66 anchors
Export to pdf
Order within BlockLocus 1Annotation 1Locus 2Annotation 2KaKs
49AT5G25340Brara.B036390.090.40
50AT5G25360Brara.B036380.050.17
51AT5G25370Brara.B036370.080.52
52AT5G25450Brara.B036350.030.67
53AT5G25470Brara.B036330.300.64
54AT5G25490Brara.B036320.090.57
55AT5G25500Brara.B036310.120.72
56AT5G25510Brara.B036300.092.46
57AT5G25530Brara.B036290.040.54
58AT5G25540Brara.B036280.240.56


[16] AT5G25340 is contained in a large block (Score 1164.0, E-value 2e-17) with 32 anchors
Export to pdf
Order within BlockLocus 1Annotation 1Locus 2Annotation 2KaKs
15AT5G25320Potri.006G2565000.000.00
16AT5G25340Potri.006G2555000.461.64


[17] AT5G25340 is contained in a large block (Score 600.0, E-value 5e-16) with 17 anchors
Export to pdf
Order within BlockLocus 1Annotation 1Locus 2Annotation 2KaKs
10AT5G25340Glyma.17G2116000.563.01


[18] AT5G25340 is contained in a large block (Score 428.0, E-value 1e-14) with 12 anchors
Export to pdf
Order within BlockLocus 1Annotation 1Locus 2Annotation 2KaKs
11AT5G25340Glyma.14G1161000.530.00


[19] AT5G25340 is contained in a large block (Score 1102.0, E-value 1e-15) with 29 anchors
Export to pdf
Order within BlockLocus 1Annotation 1Locus 2Annotation 2KaKs
17AT5G25310Glyma.06G0667000.300.00
18AT5G25340Glyma.06G0675000.582.21
19AT5G25350Glyma.06G0684000.351.76


[20] AT5G25340 is contained in a large block (Score 858.0, E-value 3e-16) with 23 anchors
Export to pdf
Order within BlockLocus 1Annotation 1Locus 2Annotation 2KaKs
15AT5G25340Glyma.04G0661000.612.75
16AT5G25350Glyma.04G0669000.341.83
17AT5G25360Glyma.04G0670000.401.37


[21] AT5G25340 is contained in a large block (Score 549.0, E-value 2e-15) with 15 anchors
Export to pdf
Order within BlockLocus 1Annotation 1Locus 2Annotation 2KaKs
11AT5G25340Medtr3g1068300.651.68


[22] AT5G25340 is contained in a small block (Score 274.0, E-value 0.0) with 8 anchors
Export to pdf
Order within BlockLocus 1Annotation 1Locus 2Annotation 2KaKs
4AT5G25340Medtr1g0126000.562.22
5AT5G25350Medtr1g0125200.321.80
6AT5G25360Medtr1g0124800.401.84
7AT5G25390Medtr1g0124700.340.00


[23] AT5G25340 is contained in a huge block (Score 65180.0, E-value 1e-64) with 1639 anchors
Export to pdf
Order within BlockLocus 1Annotation 1Locus 2Annotation 2KaKs
154916058919AT5G252400.050.15
155016051764AT5G252500.010.23
155116039323AT5G252650.010.12
155216044840AT5G252700.030.11
155316041181AT5G252800.010.23
155416037777AT5G252900.260.47
155516042306AT5G253100.080.13
155616043715AT5G253300.030.14
155716056625AT5G253400.030.15
155816056232AT5G253500.060.23
155916052997AT5G253600.010.11
156016064565AT5G253900.040.09
156116035031AT5G254250.100.20
156216066205AT5G254400.300.57
156316038265AT5G254500.010.19


[24] AT5G25340 is contained in a large block (Score 908.0, E-value 6e-70) with 25 anchors
Export to pdf
Order within BlockLocus 1Annotation 1Locus 2Annotation 2KaKs
21AT5G25340Thecc1EG0369830.533.91
22AT5G25350Thecc1EG0370010.301.69
23AT5G25360Thecc1EG0370030.231.94
24AT5G25390Thecc1EG0370070.260.00


[25] AT5G25340 is contained in a huge block (Score 7378.0, E-value 0.0) with 187 anchors
Export to pdf
Order within BlockLocus 1Annotation 1Locus 2Annotation 2KaKs
114AT5G25210Bo7g0961700.340.79
115AT5G25220Bo7g0961600.040.47
116AT5G25265Bo7g0961500.610.86
117AT5G25270Bo7g0961400.100.29
118AT5G25280Bo7g0961000.111.29
119AT5G25320Bo7g0960700.070.79
120AT5G25330Bo7g0960600.100.55
121AT5G25340Bo7g0960500.110.46
122AT5G25350Bo7g0960400.070.72
123AT5G25360Bo7g0960300.050.26
124AT5G25390Bo7g0960000.100.33
125AT5G25460Bo7g0959200.320.93
126AT5G25480Bo7g0959100.120.41
127AT5G25490Bo7g0959000.090.65
128AT5G25500Bo7g0958900.120.59
129AT5G25510Bo7g0958800.081.02
130AT5G25520Bo7g0958600.140.50
131AT5G25540Bo7g0958400.320.77


[26] AT5G25340 is contained in a huge block (Score 2812.0, E-value 1e-81) with 73 anchors
Export to pdf
Order within BlockLocus 1Annotation 1Locus 2Annotation 2KaKs
56AT5G25340Bo2g1587200.090.41
57AT5G25360Bo2g1587100.060.21
58AT5G25450Bo2g1586800.030.58
59AT5G25470Bo2g1586400.300.72
60AT5G25490Bo2g1586300.080.60
61AT5G25500Bo2g1586200.110.69
62AT5G25510Bo2g1586100.082.35
63AT5G25530Bo2g1586000.040.50
64AT5G25540Bo2g1585900.330.53


[27] AT5G25340 is contained in a huge block (Score 61768.0, E-value 2e-64) with 1553 anchors
Export to pdf
Order within BlockLocus 1Annotation 1Locus 2Annotation 2KaKs
1455AT5G25170Carubv10001926m0.020.40
1456AT5G25190Carubv10001796m0.060.44
1457AT5G25210Carubv10002045m0.170.33
1458AT5G25220Carubv10001020m0.040.39
1459AT5G25240Carubv10003765m0.100.55
1460AT5G25250Carubv10000871m0.010.44
1461AT5G25265Carubv10002427m0.030.20
1462AT5G25270Carubv10002958m0.070.16
1463AT5G25280Carubv10001949m0.040.57
1464AT5G25330Carubv10003077m0.080.34
1465AT5G25340Carubv10003840m0.050.28
1466AT5G25350Carubv10000473m0.040.30
1467AT5G25360Carubv10002127m0.010.19
1468AT5G25390Carubv10002040m0.070.39
1469AT5G25400Carubv10002499m0.010.41
1470AT5G25415Carubv10002798m0.150.32
1471AT5G25425Carubv10002137m0.160.80
1472AT5G25440Carubv10001314m0.170.50
1473AT5G25450Carubv10002241m0.040.43
1474AT5G25470Carubv10003492m0.180.30
1475AT5G25480Carubv10003005m0.040.21
1476AT5G25490Carubv10002086m0.030.34
1477AT5G25500Carubv10003184m0.050.34
1478AT5G25520Carubv10000133m0.090.23
1479AT5G25540Carubv10001953m0.160.51


[28] AT5G25340 is contained in a small block (Score 247.0, E-value 0.0) with 7 anchors
Export to pdf
Order within BlockLocus 1Annotation 1Locus 2Annotation 2KaKs
2AT5G25340orange1.1g048546m0.281.70
3AT5G25350orange1.1g006426m0.311.69


[29] AT5G25340 is contained in a small block (Score 224.0, E-value 4e-41) with 7 anchors
Export to pdf
Order within BlockLocus 1Annotation 1Locus 2Annotation 2KaKs
1AT5G25340Cla0209780.640.00
2AT5G25350Cla0209700.332.26
3AT5G25390Cla0209690.310.00


[12] AT5G25340 is contained in a large block (Score 774.0, E-value 2e-08) with 22 anchors
Export to pdf
Order within BlockLocus 1Annotation 1Locus 2Annotation 2KaKs
11AT5G25340650330.621.66
12AT5G25350649880.382.42
13AT5G25360649830.301.96


[13] AT5G25340 is contained in a large block (Score 477.0, E-value 2e-09) with 13 anchors
Export to pdf
Order within BlockLocus 1Annotation 1Locus 2Annotation 2KaKs
10AT5G25340931470.562.30
11AT5G25350931230.332.21
12AT5G25360931170.440.00
13AT5G25390931140.350.00


[30] AT5G25340 is contained in a small block (Score 255.0, E-value 2e-172) with 7 anchors
Export to pdf
Order within BlockLocus 1Annotation 1Locus 2Annotation 2KaKs
4AT5G25340Pbr027853.10.522.25
5AT5G25350Pbr027843.10.342.32
6AT5G25360Pbr027842.10.291.91


[31] AT5G25340 is contained in a small block (Score 221.0, E-value 3e-29) with 7 anchors
Export to pdf
Order within BlockLocus 1Annotation 1Locus 2Annotation 2KaKs
1AT5G25340Pm0275900.541.83


[32] AT5G25340 is contained in a small block (Score 328.0, E-value 2e-173) with 9 anchors
Export to pdf
Order within BlockLocus 1Annotation 1Locus 2Annotation 2KaKs
5AT5G25340Pm0046290.470.00
6AT5G25350Pm0046180.312.10
7AT5G25360Pm0046170.261.34
8AT5G25390Pm0046160.310.00



 Print this page