Locus Search

Obtain a report of related syntenic regions in multiple species by locus identifier
You can choose e.g. AT1G25460, GRMZM2G000039 ppa005930m



Display range :

All intra/cross-species blocks for AT5G09590, graphs and tables display ±100kb region. Blue arrows are other anchor genes in the region, red is query locus.

[1] AT5G09590 is contained in a small block (Score 205.0, E-value 3e-21) with 6 anchors
Export to pdf
Order within BlockLocus 1Annotation 1Locus 2Annotation 2KaKs
6AT5G09590Gorai.008G0182000.081.46


[2] AT5G09590 is contained in a huge block (Score 26769.0, E-value 0.0) with 684 anchors
Export to pdf
Order within BlockLocus 1Annotation 1Locus 2Annotation 2KaKs
227AT5G09300Brara.C003750.070.50
228AT5G09310Brara.C003760.130.29
229AT5G09330Brara.C003770.190.66
230AT5G09400Brara.C003780.040.42
231AT5G09430Brara.C003790.020.61
232AT5G09470Brara.C003800.050.41
233AT5G09480Brara.C003810.140.65
234AT5G09520Brara.C003830.211.10
235AT5G09550Brara.C003840.030.31
236AT5G09590Brara.C003850.030.58
237AT5G09630Brara.C003860.320.72
238AT5G09650Brara.C003880.040.43
239AT5G09760Brara.C003900.060.47
240AT5G09770Brara.C003910.050.39
241AT5G09805Brara.C003920.150.24
242AT5G09820Brara.C003940.070.41
243AT5G09850Brara.C003950.060.51


[3] AT5G09590 is contained in a huge block (Score 27175.0, E-value 0.0) with 694 anchors
Export to pdf
Order within BlockLocus 1Annotation 1Locus 2Annotation 2KaKs
195AT5G09270Brara.B003050.070.43
196AT5G09330Brara.B003060.130.61
197AT5G09370Brara.B003070.390.59
198AT5G09430Brara.B003080.030.51
199AT5G09440Brara.B003090.110.49
200AT5G09450Brara.B003120.090.60
201AT5G09520Brara.B003150.181.15
202AT5G09550Brara.B003160.020.34
203AT5G09580Brara.B003170.130.65
204AT5G09590Brara.B003180.030.54
205AT5G09650Brara.B003200.110.64
206AT5G09660Brara.B003220.140.49
207AT5G09670Brara.B003230.160.55
208AT5G09680Brara.B003240.120.88
209AT5G09690Brara.B003250.070.45
210AT5G09750Brara.B003260.040.37
211AT5G09760Brara.B003270.150.56
212AT5G09805Brara.B003280.180.31
213AT5G09860Brara.B003320.040.44


[4] AT5G09590 is contained in a large block (Score 569.0, E-value 3e-95) with 15 anchors
Export to pdf
Order within BlockLocus 1Annotation 1Locus 2Annotation 2KaKs
12AT5G09590Glyma.15G0599000.091.79
13AT5G09620Glyma.15G0606000.530.00
14AT5G09630Glyma.15G0610000.392.59
15AT5G09650Glyma.15G0613000.161.19


[5] AT5G09590 is contained in a small block (Score 267.0, E-value 2e-29) with 7 anchors
Export to pdf
Order within BlockLocus 1Annotation 1Locus 2Annotation 2KaKs
3AT5G09570Glyma.13G2560000.351.12
4AT5G09590Glyma.13G2549000.091.79
5AT5G09620Glyma.13G2543000.592.99
6AT5G09630Glyma.13G2539000.372.45
7AT5G09650Glyma.13G2536000.161.24


[6] AT5G09590 is contained in a large block (Score 444.0, E-value 0.0) with 12 anchors
Export to pdf
Order within BlockLocus 1Annotation 1Locus 2Annotation 2KaKs
9AT5G09580Glyma.08G0652000.251.14
10AT5G09590Glyma.08G0651000.101.54
11AT5G09620Glyma.08G0650000.553.38
12AT5G09660Glyma.08G0638000.202.01


[7] AT5G09590 is contained in a small block (Score 340.0, E-value 5e-21) with 9 anchors
Export to pdf
Order within BlockLocus 1Annotation 1Locus 2Annotation 2KaKs
6AT5G09580Glyma.07G1841000.311.32
7AT5G09590Glyma.07G1843000.091.52
8AT5G09620Glyma.07G1844000.560.00


[8] AT5G09590 is contained in a large block (Score 500.0, E-value 0.0) with 14 anchors
Export to pdf
Order within BlockLocus 1Annotation 1Locus 2Annotation 2KaKs
10AT5G09580Solyc01g106190.20.362.17
11AT5G09590Solyc01g106210.20.112.34
12AT5G09620Solyc01g106320.20.582.77


[9] AT5G09590 is contained in a huge block (Score 25736.0, E-value 0.0) with 659 anchors
Export to pdf
Order within BlockLocus 1Annotation 1Locus 2Annotation 2KaKs
221AT5G09300Bo3g0051300.070.43
222AT5G09310Bo3g0051400.080.36
223AT5G09330Bo3g0051500.140.52
224AT5G09400Bo3g0051600.040.43
225AT5G09470Bo3g0051700.040.43
226AT5G09550Bo3g0051900.020.31
227AT5G09590Bo3g0052000.030.58
228AT5G09630Bo3g0052100.320.70
229AT5G09650Bo3g0052200.040.42
230AT5G09760Bo3g0052500.060.54
231AT5G09770Bo3g0052700.090.51
232AT5G09805Bo3g0052800.160.22
233AT5G09820Bo3g0053000.080.38
234AT5G09850Bo3g0053100.070.55


[10] AT5G09590 is contained in a huge block (Score 20647.0, E-value 2e-139) with 529 anchors
Export to pdf
Order within BlockLocus 1Annotation 1Locus 2Annotation 2KaKs
192AT5G09270Bo2g0092900.080.36
193AT5G09330Bo2g0093000.120.62
194AT5G09370Bo2g0093100.380.60
195AT5G09430Bo2g0093300.060.66
196AT5G09440Bo2g0093400.130.52
197AT5G09450Bo2g0093700.090.60
198AT5G09520Bo2g0094000.181.50
199AT5G09550Bo2g0094100.020.32
200AT5G09580Bo2g0094200.130.55
201AT5G09590Bo2g0094300.050.58
202AT5G09640Bo2g0094400.080.30
203AT5G09650Bo2g0094500.060.33
204AT5G09660Bo2g0094600.140.46
205AT5G09670Bo2g0094700.411.01
206AT5G09690Bo2g0094800.070.46
207AT5G09750Bo2g0095100.040.42
208AT5G09760Bo2g0095200.110.53
209AT5G09790Bo2g0095300.150.55
210AT5G09860Bo2g0095800.040.41



 Print this page