Locus Search

Obtain a report of related syntenic regions in multiple species by locus identifier
You can choose e.g. AT1G25460, GRMZM2G000039 ppa005930m



Display range :

All intra/cross-species blocks for AT3G47640, graphs and tables display ±100kb region. Blue arrows are other anchor genes in the region, red is query locus.

[1] AT3G47640 is contained in a small block (Score 331.0, E-value 9e-161) with 9 anchors
Export to pdf
Order within BlockLocus 1Annotation 1Locus 2Annotation 2KaKs
3AT3G47610GSVIVT010080190010.261.60
4AT3G47620GSVIVT010080230010.000.00
5AT3G47640GSVIVT010080250010.421.87
6AT3G47700GSVIVT010080310010.341.45


[2] AT3G47640 is contained in a small block (Score 208.0, E-value 1e-41) with 6 anchors
Export to pdf
Order within BlockLocus 1Annotation 1Locus 2Annotation 2KaKs
1AT3G47640GSVIVT010113860010.512.74
2AT3G47710GSVIVT010113800010.000.00


[3] AT3G47640 is contained in a small block (Score 297.0, E-value 1e-162) with 8 anchors
Export to pdf
Order within BlockLocus 1Annotation 1Locus 2Annotation 2KaKs
7AT3G47640PGSC0003DMC4000012050.431.42
8AT3G47690PGSC0003DMC4000012460.231.71


[4] AT3G47640 is contained in a large block (Score 474.0, E-value 1e-149) with 13 anchors
Export to pdf
Order within BlockLocus 1Annotation 1Locus 2Annotation 2KaKs
1AT3G4761030147.m014123 signal cointegrator, putative0.252.29
2AT3G4764030147.m014112 binding protein, putative0.321.62
3AT3G4769030147.m014109 hypothetical protein0.211.53
4AT3G4770030147.m014105 hypothetical protein0.301.74
5AT3G4771030147.m014102 regulator, putative0.191.77


[5] AT3G47640 is contained in a large block (Score 817.0, E-value 2e-80) with 23 anchors
Export to pdf
Order within BlockLocus 1Annotation 1Locus 2Annotation 2KaKs
4AT3G47600Phvul.003G1904000.401.80
5AT3G47610Phvul.003G1907000.293.18
6AT3G47640Phvul.003G1910000.000.00
7AT3G47730Phvul.003G1916000.892.84


[6] AT3G47640 is contained in a large block (Score 740.0, E-value 2e-160) with 20 anchors
Export to pdf
Order within BlockLocus 1Annotation 1Locus 2Annotation 2KaKs
9AT3G47640ppa010295m0.350.00
10AT3G47670ppa026135m0.501.12
11AT3G47700ppa001570m0.281.74
12AT3G47710ppa018631m0.193.58
13AT3G47730ppa022543m0.221.71


[7] AT3G47640 is contained in a small block (Score 257.0, E-value 0.0) with 7 anchors
Export to pdf
Order within BlockLocus 1Annotation 1Locus 2Annotation 2KaKs
1AT3G47520Gorai.007G0378000.162.28
2AT3G47550Gorai.007G0375000.341.82
3AT3G47600Gorai.007G0371000.362.44
4AT3G47640Gorai.007G0367000.382.23
5AT3G47670Gorai.007G0364000.541.19
6AT3G47730Gorai.007G0359000.211.53


[8] AT3G47640 is contained in a large block (Score 548.0, E-value 6e-166) with 16 anchors
Export to pdf
Order within BlockLocus 1Annotation 1Locus 2Annotation 2KaKs
8AT3G47620Eucgr.B004710.580.00
9AT3G47640Eucgr.B004700.320.00
10AT3G47690Eucgr.B004680.191.77
11AT3G47800Eucgr.B004590.280.00


[9] AT3G47640 is contained in a large block (Score 436.0, E-value 4e-157) with 12 anchors
Export to pdf
Order within BlockLocus 1Annotation 1Locus 2Annotation 2KaKs
1AT3G47470169684930.102.51
2AT3G47490169684920.322.21
3AT3G47500169684910.410.00
4AT3G47520169684870.181.37
5AT3G47530169684850.272.56
6AT3G47600169684810.410.00
7AT3G47640169684740.433.95
8AT3G47730169684600.212.14


[10] AT3G47640 is contained in a small block (Score 376.0, E-value 6e-85) with 10 anchors
Export to pdf
Order within BlockLocus 1Annotation 1Locus 2Annotation 2KaKs
5AT3G47600C.cajan_017080.392.81
6AT3G47610C.cajan_017050.273.07
7AT3G47640C.cajan_017010.442.46
8AT3G47690C.cajan_016990.201.53
9AT3G47730C.cajan_016910.882.58


[12] AT3G47640 is contained in a large block (Score 413.0, E-value 4e-88) with 11 anchors
Export to pdf
Order within BlockLocus 1Annotation 1Locus 2Annotation 2KaKs
2AT3G47480Brara.F019610.090.46
3AT3G47520Brara.F019620.150.68
4AT3G47530Brara.F019630.070.54
5AT3G47550Brara.F019640.040.46
6AT3G47560Brara.F019650.120.45
7AT3G47640Brara.F019660.080.38
8AT3G47650Brara.F019670.140.29
9AT3G47660Brara.F019680.070.48
10AT3G47810Brara.F019700.030.46
11AT3G47860Brara.F019720.120.54


[13] AT3G47640 is contained in a large block (Score 565.0, E-value 1e-157) with 15 anchors
Export to pdf
Order within BlockLocus 1Annotation 1Locus 2Annotation 2KaKs
8AT3G47610mrna259970.305.11
9AT3G47620mrna259850.510.00
10AT3G47640mrna259840.430.00
11AT3G47670mrna259800.521.46
12AT3G47700mrna259780.301.95
13AT3G47710mrna259730.241.61
14AT3G47730mrna259680.271.79


[14] AT3G47640 is contained in a large block (Score 446.0, E-value 6e-77) with 12 anchors
Export to pdf
Order within BlockLocus 1Annotation 1Locus 2Annotation 2KaKs
4AT3G47600Glyma.17G0998000.372.39
5AT3G47610Glyma.17G0993000.293.37
6AT3G47640Glyma.17G0989000.444.03
7AT3G47690Glyma.17G0987000.201.54
8AT3G47730Glyma.17G0983000.873.02


[15] AT3G47640 is contained in a large block (Score 440.0, E-value 2e-40) with 12 anchors
Export to pdf
Order within BlockLocus 1Annotation 1Locus 2Annotation 2KaKs
4AT3G47600Glyma.05G0270000.362.30
5AT3G47640Glyma.05G0276000.452.79
6AT3G47730Glyma.05G0285000.892.23


[16] AT3G47640 is contained in a small block (Score 220.0, E-value 4e-123) with 6 anchors
Export to pdf
Order within BlockLocus 1Annotation 1Locus 2Annotation 2KaKs
5scaffold00010.404AT3G476400.630.00
6scaffold00010.407AT3G476200.550.00


[17] AT3G47640 is contained in a huge block (Score 60155.0, E-value 2e-165) with 1522 anchors
Export to pdf
Order within BlockLocus 1Annotation 1Locus 2Annotation 2KaKs
44016055304AT3G476000.020.10
44116064760AT3G476100.010.13
44216038226AT3G476200.010.16
44316049199AT3G476300.030.16
44416061207AT3G476400.020.20
44516035289AT3G476500.010.06
44616045208AT3G476700.040.21
44716055293AT3G476900.010.14
44816064889AT3G477000.020.16
44916038793AT3G477200.070.20
45016061543AT3G478000.010.16
45116039999AT3G478100.000.16
45216064644AT3G478200.020.19
45316059704AT3G478300.050.19
45416041222AT3G478330.010.31
45516044426AT3G478400.040.14


[18] AT3G47640 is contained in a large block (Score 463.0, E-value 6e-96) with 13 anchors
Export to pdf
Order within BlockLocus 1Annotation 1Locus 2Annotation 2KaKs
5Achn217791AT3G478100.072.84
6Achn217771AT3G477100.202.09
7Achn217751AT3G476400.621.84
8Achn217701AT3G476100.360.00


[19] AT3G47640 is contained in a small block (Score 300.0, E-value 6e-162) with 8 anchors
Export to pdf
Order within BlockLocus 1Annotation 1Locus 2Annotation 2KaKs
7AT3G47640Solyc03g116340.20.483.88
8AT3G47690Solyc03g116370.20.191.54


[20] AT3G47640 is contained in a large block (Score 384.0, E-value 6e-155) with 11 anchors
Export to pdf
Order within BlockLocus 1Annotation 1Locus 2Annotation 2KaKs
5AT3G47610Thecc1EG0139530.212.43
6AT3G47640Thecc1EG0139400.361.42
7AT3G47670Thecc1EG0139330.591.77


[21] AT3G47640 is contained in a huge block (Score 2668.0, E-value 0.0) with 71 anchors
Export to pdf
Order within BlockLocus 1Annotation 1Locus 2Annotation 2KaKs
12AT3G47550Bo3g1150000.070.47
13AT3G47640Bo3g1149500.090.40
14AT3G47650Bo3g1149400.290.40
15AT3G47660Bo3g1149300.080.46
16AT3G47810Bo3g1149100.020.40
17AT3G47833Bo3g1148800.150.42


[22] AT3G47640 is contained in a huge block (Score 3088.0, E-value 0.0) with 80 anchors
Export to pdf
Order within BlockLocus 1Annotation 1Locus 2Annotation 2KaKs
63AT3G47610Bo3g1347000.060.38
64AT3G47620Bo3g1347200.070.56
65AT3G47630Bo3g1347300.050.35
66AT3G47640Bo3g1357400.300.56
67AT3G47650Bo3g1357500.190.39
68AT3G47670Bo3g1357600.150.50
69AT3G47690Bo3g1357900.060.30
70AT3G47700Bo3g1358200.050.38
71AT3G47710Bo3g1358300.040.22
72AT3G47730Bo3g1358400.060.46


[23] AT3G47640 is contained in a huge block (Score 2824.0, E-value 3e-85) with 74 anchors
Export to pdf
Order within BlockLocus 1Annotation 1Locus 2Annotation 2KaKs
1AT3G47640Bo1g0722200.140.46
2AT3G47650Bo1g0722500.130.26
3AT3G47670Bo1g0723300.441.02
4AT3G47730Bo1g0723500.080.42


[24] AT3G47640 is contained in a huge block (Score 42071.0, E-value 1e-146) with 1059 anchors
Export to pdf
Order within BlockLocus 1Annotation 1Locus 2Annotation 2KaKs
40AT3G47450Carubv10016901m0.030.32
41AT3G47460Carubv10016600m0.040.25
42AT3G47470Carubv10017894m0.020.15
43AT3G47480Carubv10018903m0.050.27
44AT3G47490Carubv10017985m0.020.26
45AT3G47500Carubv10017140m0.080.36
46AT3G47510Carubv10018333m0.110.46
47AT3G47520Carubv10017362m0.030.47
48AT3G47530Carubv10019129m0.040.27
49AT3G47540Carubv10018014m0.110.29
50AT3G47600Carubv10017612m0.030.23
51AT3G47610Carubv10017360m0.030.27
52AT3G47620Carubv10017043m0.040.33
53AT3G47630Carubv10019459m0.020.27
54AT3G47640Carubv10017931m0.040.31
55AT3G47650Carubv10018219m0.070.18
56AT3G47670Carubv10017832m0.120.37
57AT3G47690Carubv10017767m0.020.20
58AT3G47700Carubv10016705m0.040.27
59AT3G47720Carubv10019284m0.080.44
60AT3G47800Carubv10017512m0.050.26
61AT3G47810Carubv10017780m0.050.30
62AT3G47820Carubv10016981m0.050.40
63AT3G47830Carubv10017731m0.060.34
64AT3G47833Carubv10018302m0.010.23
65AT3G47840Carubv10018436m0.070.26
66AT3G47860Carubv10017494m0.060.24
67AT3G47870Carubv10018376m0.070.38
68AT3G47890Carubv10016569m0.060.25


[25] AT3G47640 is contained in a small block (Score 259.0, E-value 4e-151) with 7 anchors
Export to pdf
Order within BlockLocus 1Annotation 1Locus 2Annotation 2KaKs
1AT3G47610orange1.1g015323m0.000.00
2AT3G47640orange1.1g026212m0.372.96
3AT3G47690orange1.1g024284m0.242.30
4AT3G47700orange1.1g003707m0.281.51
5AT3G47710orange1.1g048534m0.161.64
6AT3G47730orange1.1g009374m0.181.61


[26] AT3G47640 is contained in a large block (Score 1338.0, E-value 1e-158) with 36 anchors
Export to pdf
Order within BlockLocus 1Annotation 1Locus 2Annotation 2KaKs
3AT3G47500Cla0191070.410.00
4AT3G47520Cla0191100.161.45
5AT3G47530Cla0191110.271.79
6AT3G47640Cla0191190.360.00
7AT3G47710Cla0191210.201.70
8AT3G47800Cla0191230.311.49


[27] AT3G47640 is contained in a small block (Score 221.0, E-value 5e-16) with 6 anchors
Export to pdf
Order within BlockLocus 1Annotation 1Locus 2Annotation 2KaKs
5AT3G47640p5_sc00054.V1.gene4050.681.96


[28] AT3G47640 is contained in a small block (Score 214.0, E-value 5e-119) with 6 anchors
Export to pdf
Order within BlockLocus 1Annotation 1Locus 2Annotation 2KaKs
4AT3G47640p5_sc00049.V1.gene680.000.00
5AT3G47700p5_sc00049.V1.gene780.000.00


[29] AT3G47640 is contained in a small block (Score 268.0, E-value 4e-111) with 8 anchors
Export to pdf
Order within BlockLocus 1Annotation 1Locus 2Annotation 2KaKs
6AT3G47640p5_sc00035.V1.gene1610.000.00


[11] AT3G47640 is contained in a large block (Score 527.0, E-value 1e-81) with 14 anchors
Export to pdf
Order within BlockLocus 1Annotation 1Locus 2Annotation 2KaKs
4AT3G47610162490.292.46
5AT3G47620162650.472.64
6AT3G47640162670.392.11
7AT3G47690162780.241.48
8AT3G47730163110.912.15


[30] AT3G47640 is contained in a small block (Score 343.0, E-value 2e-161) with 10 anchors
Export to pdf
Order within BlockLocus 1Annotation 1Locus 2Annotation 2KaKs
5AT3G47640NNU_008541-RA0.493.80


[31] AT3G47640 is contained in a large block (Score 508.0, E-value 1e-159) with 14 anchors
Export to pdf
Order within BlockLocus 1Annotation 1Locus 2Annotation 2KaKs
6AT3G47600Pbr011441.10.331.79
7AT3G47610Pbr011447.10.282.04
8AT3G47640Pbr011456.10.373.13
9AT3G47670Pbr011459.10.571.37
10AT3G47700Pbr011461.10.301.84
11AT3G47730Pbr011467.30.943.10


[32] AT3G47640 is contained in a small block (Score 267.0, E-value 2e-09) with 8 anchors
Export to pdf
Order within BlockLocus 1Annotation 1Locus 2Annotation 2KaKs
1AT3G47640Pm0247661.271.93



 Print this page