Locus Search

Obtain a report of related syntenic regions in multiple species by locus identifier
You can choose e.g. AT1G25460, GRMZM2G000039 ppa005930m



Display range :

All intra/cross-species blocks for AT3G47400, graphs and tables display ±100kb region. Blue arrows are other anchor genes in the region, red is query locus.

[1] AT3G47400 is contained in a small block (Score 263.0, E-value 4e-79) with 7 anchors
Export to pdf
Order within BlockLocus 1Annotation 1Locus 2Annotation 2KaKs
2AT3G47380ppa011607m0.523.12
3AT3G47400ppa021446m0.370.00
4AT3G47420ppa004254m0.194.87
5AT3G47430ppa022507m0.190.00
6AT3G47450ppa003526m0.241.43
7AT3G47460ppa000445m0.161.39


[2] AT3G47400 is contained in a huge block (Score 6150.0, E-value 3e-42) with 158 anchors
Export to pdf
Order within BlockLocus 1Annotation 1Locus 2Annotation 2KaKs
55AT3G47295Brara.F017670.120.16
56AT3G47340Brara.F017660.030.38
57AT3G47390Brara.F017640.080.44
58AT3G47400Brara.F017630.040.49
59AT3G47410Brara.F017620.280.49
60AT3G47420Brara.F017610.040.62
61AT3G47430Brara.F017600.050.47
62AT3G47440Brara.F017590.040.47
63AT3G47450Brara.F017580.050.44
64AT3G47460Brara.F017570.050.36
65AT3G47470Brara.F017560.030.34
66AT3G47480Brara.F017550.110.37
67AT3G47490Brara.F017540.050.38
68AT3G47500Brara.F017530.100.52


[3] AT3G47400 is contained in a small block (Score 222.0, E-value 1e-07) with 6 anchors
Export to pdf
Order within BlockLocus 1Annotation 1Locus 2Annotation 2KaKs
2AT3G47400Thecc1EG0149420.370.00
3AT3G47420Thecc1EG0149260.171.97


[4] AT3G47400 is contained in a small block (Score 256.0, E-value 5e-75) with 7 anchors
Export to pdf
Order within BlockLocus 1Annotation 1Locus 2Annotation 2KaKs
2AT3G47380orange1.1g048399m0.000.00
3AT3G47400orange1.1g036696m0.000.00


[5] AT3G47400 is contained in a small block (Score 268.0, E-value 4e-111) with 8 anchors
Export to pdf
Order within BlockLocus 1Annotation 1Locus 2Annotation 2KaKs
1AT3G47400p5_sc00035.V1.gene4470.753.87


[6] AT3G47400 is contained in a small block (Score 261.0, E-value 2e-79) with 7 anchors
Export to pdf
Order within BlockLocus 1Annotation 1Locus 2Annotation 2KaKs
2AT3G47380Pm0194740.421.78
3AT3G47400Pm0194860.330.00
4AT3G47420Pm0194990.200.00
5AT3G47430Pm0195020.190.00
6AT3G47450Pm0195050.281.70
7AT3G47460Pm0195060.161.41



 Print this page