Locus Search

Obtain a report of related syntenic regions in multiple species by locus identifier
You can choose e.g. AT1G25460, GRMZM2G000039 ppa005930m



Display range :

All intra/cross-species blocks for AT3G17440, graphs and tables display ±100kb region. Blue arrows are other anchor genes in the region, red is query locus.

[1] AT3G17440 is contained in a huge block (Score 4242.0, E-value 6e-08) with 111 anchors
Export to pdf
Order within BlockLocus 1Annotation 1Locus 2Annotation 2KaKs
3AT1G48010AT3G172200.951.49
4AT1G48030AT3G172400.040.94
5AT1G48040AT3G172500.201.06
6AT1G48110AT3G173300.220.59
7AT1G48210AT3G174100.070.47
8AT1G48230AT3G174300.050.70
9AT1G48240AT3G174400.040.71
10AT1G48260AT3G175100.130.92
11AT1G48330AT3G175800.101.03
12AT1G48350AT3G176260.330.99
13AT1G48370AT3G176500.080.74
14AT1G48405AT3G176800.261.09


[2] AT3G17440 is contained in a large block (Score 815.0, E-value 1e-33) with 21 anchors
Export to pdf
Order within BlockLocus 1Annotation 1Locus 2Annotation 2KaKs
8AT3G17390GSVIVT010176750010.000.00
9AT3G17410GSVIVT010176800010.141.22
10AT3G17430GSVIVT010176820010.111.35
11AT3G17440GSVIVT010176830010.101.33
12AT3G17450GSVIVT010176860010.281.61
13AT3G17465GSVIVT010176880010.151.37
14AT3G17470GSVIVT010176890010.232.24
15AT3G17510GSVIVT010176900010.192.14


[3] AT3G17440 is contained in a large block (Score 490.0, E-value 0.0) with 14 anchors
Export to pdf
Order within BlockLocus 1Annotation 1Locus 2Annotation 2KaKs
8AT3G17240PGSC0003DMC4000081550.112.14
9AT3G17330PGSC0003DMC4000081530.512.04
10AT3G17390PGSC0003DMC4000083030.061.20
11AT3G17440PGSC0003DMC4000081440.000.00
12AT3G17470PGSC0003DMC4000082950.224.25
13AT3G17510PGSC0003DMC4000081370.000.00
14AT3G17626PGSC0003DMC4000082920.371.22


[4] AT3G17440 is contained in a large block (Score 1295.0, E-value 0.0) with 34 anchors
Export to pdf
Order within BlockLocus 1Annotation 1Locus 2Annotation 2KaKs
24AT3G1738029889.m003378 acid binding protein, putative0.333.01
25AT3G1739029889.m003381 synthetase, putative0.061.42
26AT3G1743029889.m003390 anion transporter, putative0.101.45
27AT3G1744029889.m003391 plant snare, putative0.101.83
28AT3G1746029889.m003397 binding protein, putative0.571.71
29AT3G1746529889.m003398 ribosomal protein L3, putative0.141.26
30AT3G1747029889.m003399 3'-pyrophosphohydrolase, putative0.173.88


[5] AT3G17440 is contained in a large block (Score 1233.0, E-value 2e-34) with 33 anchors
Export to pdf
Order within BlockLocus 1Annotation 1Locus 2Annotation 2KaKs
27AT3G17430Phvul.003G1212000.101.34
28AT3G17440Phvul.003G1213000.000.00
29AT3G17470Phvul.003G1215000.242.46


[6] AT3G17440 is contained in a large block (Score 1671.0, E-value 9e-41) with 45 anchors
Export to pdf
Order within BlockLocus 1Annotation 1Locus 2Annotation 2KaKs
38AT3G17390ppa006833m0.041.11
39AT3G17410ppa007758m0.111.36
40AT3G17430ppa007310m0.091.37
41AT3G17440ppa010000m0.131.34
42AT3G17450ppa001126m0.291.95
43AT3G17460ppa011606m0.741.42
44AT3G17465ppa008555m0.161.19
45AT3G17470ppa005600m0.202.38


[7] AT3G17440 is contained in a large block (Score 543.0, E-value 0.0) with 15 anchors
Export to pdf
Order within BlockLocus 1Annotation 1Locus 2Annotation 2KaKs
9AT3G17340Gorai.005G0709000.291.31
10AT3G17365Gorai.005G0710000.301.18
11AT3G17380Gorai.005G0711000.281.83
12AT3G17390Gorai.005G0713000.051.65
13AT3G17440Gorai.005G0718000.071.45


[8] AT3G17440 is contained in a large block (Score 994.0, E-value 1e-27) with 26 anchors
Export to pdf
Order within BlockLocus 1Annotation 1Locus 2Annotation 2KaKs
19AT3G17390Eucgr.H041120.042.86
20AT3G17430Eucgr.H041200.122.09
21AT3G17440Eucgr.H041210.122.21
22AT3G17465Eucgr.H041240.181.73
23AT3G17470Eucgr.H041250.250.00


[9] AT3G17440 is contained in a small block (Score 341.0, E-value 1e-131) with 9 anchors
Export to pdf
Order within BlockLocus 1Annotation 1Locus 2Annotation 2KaKs
2AT3G17240169628780.093.31
3AT3G17310169628810.732.15
4AT3G17330169628860.401.72
5AT3G17340169628890.361.64
6AT3G17380169628950.352.13
7AT3G17430169628980.000.00
8AT3G17440169629010.113.19
9AT3G17510169629070.290.00


[10] AT3G17440 is contained in a small block (Score 383.0, E-value 9e-114) with 10 anchors
Export to pdf
Order within BlockLocus 1Annotation 1Locus 2Annotation 2KaKs
4AT3G17430C.cajan_039240.101.34
5AT3G17440C.cajan_039250.112.84
6AT3G17470C.cajan_039260.160.00


[12] AT3G17440 is contained in a huge block (Score 38891.0, E-value 0.0) with 984 anchors
Export to pdf
Order within BlockLocus 1Annotation 1Locus 2Annotation 2KaKs
718AT3G17310Brara.E024540.120.46
719AT3G17340Brara.E024520.070.27
720AT3G17350Brara.E024450.150.54
721AT3G17440Brara.E024410.040.32
722AT3G17465Brara.E024400.080.53
723AT3G17510Brara.E024380.040.32
724AT3G17520Brara.E024370.130.68
725AT3G17580Brara.E024350.030.54
726AT3G17590Brara.E024340.040.29
727AT3G17600Brara.E024330.080.45
728AT3G17609Brara.E024320.070.44
729AT3G17611Brara.E024310.090.62
730AT3G17640Brara.E024290.100.36
731AT3G17660Brara.E024280.070.28
732AT3G17670Brara.E024270.090.42
733AT3G17675Brara.E024260.110.27
734AT3G17680Brara.E024250.200.54
735AT3G17690Brara.E024220.150.53


[13] AT3G17440 is contained in a huge block (Score 16857.0, E-value 0.0) with 435 anchors
Export to pdf
Order within BlockLocus 1Annotation 1Locus 2Annotation 2KaKs
223AT3G17225Brara.C036340.320.44
224AT3G17300Brara.C036370.030.32
225AT3G17365Brara.C036380.120.69
226AT3G17380Brara.C036390.060.48
227AT3G17390Brara.C036400.020.88
228AT3G17440Brara.C036420.020.40
229AT3G17520Brara.C036450.180.75
230AT3G17580Brara.C036480.050.48
231AT3G17600Brara.C036490.100.31
232AT3G17609Brara.C036500.040.38
233AT3G17640Brara.C036520.080.32
234AT3G17690Brara.C036560.290.57


[14] AT3G17440 is contained in a huge block (Score 22367.0, E-value 1e-97) with 571 anchors
Export to pdf
Order within BlockLocus 1Annotation 1Locus 2Annotation 2KaKs
335AT3G17205Brara.A030130.050.29
336AT3G17210Brara.A030090.080.46
337AT3G17220Brara.A030080.200.45
338AT3G17270Brara.A030070.601.32
339AT3G17300Brara.A030060.040.31
340AT3G17365Brara.A030030.130.77
341AT3G17390Brara.A030020.001.32
342AT3G17440Brara.A029970.030.34
343AT3G17460Brara.A029960.310.70
344AT3G17465Brara.A029930.100.59
345AT3G17530Brara.A029920.490.78


[15] AT3G17440 is contained in a large block (Score 734.0, E-value 0.0) with 19 anchors
Export to pdf
Order within BlockLocus 1Annotation 1Locus 2Annotation 2KaKs
10AT3G17380evm.TU.supercontig_146.380.231.24
11AT3G17410evm.TU.supercontig_146.320.161.41
12AT3G17430evm.TU.supercontig_146.300.091.11
13AT3G17440evm.TU.supercontig_146.290.071.63
14AT3G17465evm.TU.supercontig_146.240.181.54
15AT3G17470evm.TU.supercontig_146.230.241.96
16AT3G17510evm.TU.supercontig_146.220.181.25
17AT3G17590evm.TU.supercontig_146.90.241.53


[16] AT3G17440 is contained in a large block (Score 643.0, E-value 5e-47) with 17 anchors
Export to pdf
Order within BlockLocus 1Annotation 1Locus 2Annotation 2KaKs
6AT3G17410mrna228170.151.50
7AT3G17430mrna228150.111.23
8AT3G17440mrna228140.101.51
9AT3G17450mrna228120.362.24
10AT3G17460mrna228100.591.48
11AT3G17465mrna228090.211.28
12AT3G17470mrna228080.282.27


[17] AT3G17440 is contained in a small block (Score 390.0, E-value 0.0) with 10 anchors
Export to pdf
Order within BlockLocus 1Annotation 1Locus 2Annotation 2KaKs
1AT3G17430Potri.010G0017000.101.15
2AT3G17440Potri.010G0019000.091.31
3AT3G17460Potri.010G0022000.551.16
4AT3G17465Potri.010G0023000.181.22
5AT3G17470Potri.010G0024000.221.93


[18] AT3G17440 is contained in a large block (Score 1450.0, E-value 0.0) with 38 anchors
Export to pdf
Order within BlockLocus 1Annotation 1Locus 2Annotation 2KaKs
31AT3G17380Glyma.17G0389000.371.80
32AT3G17390Glyma.17G0390000.052.07
33AT3G17440Glyma.17G0404000.102.76
34AT3G17510Glyma.17G0407000.221.95


[19] AT3G17440 is contained in a small block (Score 266.0, E-value 2e-156) with 7 anchors
Export to pdf
Order within BlockLocus 1Annotation 1Locus 2Annotation 2KaKs
1AT3G17440Glyma.13G1199000.090.00
2AT3G17470Glyma.13G1196000.243.00
3AT3G17510Glyma.13G1195000.212.10


[20] AT3G17440 is contained in a small block (Score 321.0, E-value 2e-90) with 9 anchors
Export to pdf
Order within BlockLocus 1Annotation 1Locus 2Annotation 2KaKs
4scaffold00045.69AT3G174100.152.22
5scaffold00045.70AT3G174200.302.64
6scaffold00045.74AT3G174400.142.14


[21] AT3G17440 is contained in a large block (Score 1095.0, E-value 4e-127) with 30 anchors
Export to pdf
Order within BlockLocus 1Annotation 1Locus 2Annotation 2KaKs
23AT3G17380Medtr4g1237500.381.99
24AT3G17390Medtr4g1238100.061.33
25AT3G17440Medtr4g1239100.112.46
26AT3G17470Medtr4g1239300.262.43


[22] AT3G17440 is contained in a huge block (Score 62910.0, E-value 1e-102) with 1586 anchors
Export to pdf
Order within BlockLocus 1Annotation 1Locus 2Annotation 2KaKs
107816050145AT3G172650.360.56
107916038662AT3G173000.000.03
108016063496AT3G173100.030.11
108116037814AT3G173200.190.35
108216034062AT3G173400.030.08
108316061603AT3G173500.040.18
108416046325AT3G173650.080.21
108516044980AT3G173700.080.22
108616037188AT3G173800.010.13
108716037310AT3G174400.000.10
108816065726AT3G174600.060.09
108916047519AT3G174650.020.14
109016038083AT3G174700.020.14
109116034763AT3G175200.030.23
109216062173AT3G175300.150.21
109316044553AT3G175600.060.10
109416038648AT3G175800.010.08
109516055567AT3G175900.010.13
109616035073AT3G176000.000.12
109716065551AT3G176090.010.18
109816043338AT3G176110.010.17
109916055021AT3G176200.140.18
110016043716AT3G176400.010.11
110116038259AT3G176600.010.07
110216046992AT3G176680.040.15
110316054546AT3G176700.020.14
110416055002AT3G176750.030.09
110516039988AT3G176800.050.18
110616036408AT3G176900.040.13


[23] AT3G17440 is contained in a large block (Score 611.0, E-value 2e-44) with 17 anchors
Export to pdf
Order within BlockLocus 1Annotation 1Locus 2Annotation 2KaKs
316045887AT3G174400.040.73
416058960AT3G175800.091.12
516047838AT3G176260.321.14
616045489AT3G176800.241.75


[24] AT3G17440 is contained in a large block (Score 940.0, E-value 0.0) with 25 anchors
Export to pdf
Order within BlockLocus 1Annotation 1Locus 2Annotation 2KaKs
1Achn103641AT3G174700.274.99
2Achn102531AT3G174650.171.54
3Achn102541AT3G174500.301.89
4Achn102551AT3G174400.211.88


[25] AT3G17440 is contained in a large block (Score 411.0, E-value 2e-86) with 11 anchors
Export to pdf
Order within BlockLocus 1Annotation 1Locus 2Annotation 2KaKs
2Achn325311AT3G174650.171.53
3Achn325331AT3G174400.111.62
4Achn325061AT3G174300.221.73
5Achn325051AT3G174100.181.58
6Achn325041AT3G173800.370.00
7Achn325371AT3G173650.351.62


[26] AT3G17440 is contained in a large block (Score 539.0, E-value 7e-36) with 15 anchors
Export to pdf
Order within BlockLocus 1Annotation 1Locus 2Annotation 2KaKs
14Achn236921AT3G173900.041.75
15Achn235721AT3G174400.162.29


[27] AT3G17440 is contained in a large block (Score 476.0, E-value 0.0) with 13 anchors
Export to pdf
Order within BlockLocus 1Annotation 1Locus 2Annotation 2KaKs
9AT3G17240Solyc12g099100.10.112.00
10AT3G17330Solyc12g099090.10.502.45
11AT3G17440Solyc12g098950.10.000.00
12AT3G17470Solyc12g098920.10.000.00
13AT3G17580Solyc12g098880.10.361.84


[28] AT3G17440 is contained in a huge block (Score 2046.0, E-value 3e-47) with 54 anchors
Export to pdf
Order within BlockLocus 1Annotation 1Locus 2Annotation 2KaKs
47AT3G17380Thecc1EG0214720.271.78
48AT3G17410Thecc1EG0214840.141.33
49AT3G17430Thecc1EG0214870.091.46
50AT3G17440Thecc1EG0214880.081.37
51AT3G17460Thecc1EG0214950.671.67
52AT3G17465Thecc1EG0214960.181.71
53AT3G17470Thecc1EG0214970.222.65


[29] AT3G17440 is contained in a small block (Score 235.0, E-value 3e-121) with 6 anchors
Export to pdf
Order within BlockLocus 1Annotation 1Locus 2Annotation 2KaKs
1AT3G17365Bo00763s0100.120.81
2AT3G17390Bo00763s0200.021.07
3AT3G17440Bo00763s1000.030.36
4AT3G17450Bo00763s1200.130.60
5AT3G17460Bo00763s1300.310.65
6AT3G17465Bo00763s1701.920.00


[30] AT3G17440 is contained in a small block (Score 328.0, E-value 5e-34) with 9 anchors
Export to pdf
Order within BlockLocus 1Annotation 1Locus 2Annotation 2KaKs
2AT3G17440Bo8g0162700.151.08
3AT3G17510Bo8g0162500.271.02


[31] AT3G17440 is contained in a huge block (Score 44735.0, E-value 0.0) with 1137 anchors
Export to pdf
Order within BlockLocus 1Annotation 1Locus 2Annotation 2KaKs
833AT3G17240Bo5g1232200.020.53
834AT3G17250Bo5g1232100.100.71
835AT3G17310Bo5g1231600.120.50
836AT3G17340Bo5g1231500.070.27
837AT3G17350Bo5g1231200.150.58
838AT3G17360Bo5g1231100.090.31
839AT3G17430Bo5g1230800.060.52
840AT3G17440Bo5g1230700.030.31
841AT3G17460Bo5g1230600.380.45
842AT3G17465Bo5g1230500.090.49
843AT3G17510Bo5g1229100.040.34


[32] AT3G17440 is contained in a huge block (Score 60664.0, E-value 5e-105) with 1526 anchors
Export to pdf
Order within BlockLocus 1Annotation 1Locus 2Annotation 2KaKs
1023AT3G17205Carubv10012881m0.030.16
1024AT3G17210Carubv10014967m0.030.33
1025AT3G17220Carubv10015617m0.060.26
1026AT3G17240Carubv10013431m0.020.22
1027AT3G17250Carubv10013776m0.040.29
1028AT3G17300Carubv10015001m0.000.12
1029AT3G17310Carubv10013084m0.070.29
1030AT3G17340Carubv10012837m0.050.20
1031AT3G17365Carubv10014513m0.110.32
1032AT3G17380Carubv10014349m0.060.27
1033AT3G17390Carubv10013777m0.010.24
1034AT3G17430Carubv10013966m0.010.20
1035AT3G17440Carubv10014402m0.010.16
1036AT3G17450Carubv10013083m0.080.22
1037AT3G17460Carubv10014661m0.160.21
1038AT3G17465Carubv10014193m0.040.19
1039AT3G17470Carubv10013704m0.040.23
1040AT3G17510Carubv10013974m0.010.27
1041AT3G17520Carubv10015245m0.070.43
1042AT3G17560Carubv10015619m0.100.26
1043AT3G17580Carubv10015025m0.020.16
1044AT3G17590Carubv10014510m0.030.18
1045AT3G17600Carubv10016092m0.020.25
1046AT3G17609Carubv10016493m0.210.62
1047AT3G17611Carubv10014136m0.030.39
1048AT3G17640Carubv10013885m0.040.19
1049AT3G17660Carubv10016106m0.040.17
1050AT3G17668Carubv10014892m0.100.19
1051AT3G17670Carubv10014523m0.050.24
1052AT3G17675Carubv10015419m0.040.16
1053AT3G17680Carubv10016485m0.090.30
1054AT3G17690Carubv10015585m0.070.23
1055AT3G17712Carubv10012846m0.090.27
1056AT3G17720Carubv10015543m0.190.37


[33] AT3G17440 is contained in a large block (Score 809.0, E-value 3e-28) with 22 anchors
Export to pdf
Order within BlockLocus 1Annotation 1Locus 2Annotation 2KaKs
4AT3G17430Carubv10009507m0.060.76
5AT3G17440Carubv10010333m0.100.87
6AT3G17580Carubv10011815m0.140.79
7AT3G17626Carubv10012508m0.330.99
8AT3G17680Carubv10012487m0.261.16


[34] AT3G17440 is contained in a large block (Score 1625.0, E-value 0.0) with 43 anchors
Export to pdf
Order within BlockLocus 1Annotation 1Locus 2Annotation 2KaKs
36AT3G17410orange1.1g018425m0.151.24
37AT3G17430orange1.1g016904m0.081.04
38AT3G17440orange1.1g022587m0.091.67
39AT3G17450orange1.1g047254m0.351.66
40AT3G17460orange1.1g042859m0.511.42
41AT3G17470orange1.1g008155m0.232.34


[35] AT3G17440 is contained in a large block (Score 784.0, E-value 6e-08) with 21 anchors
Export to pdf
Order within BlockLocus 1Annotation 1Locus 2Annotation 2KaKs
19AT3G17360Cla0092120.452.17
20AT3G17380Cla0092110.362.74
21AT3G17440Cla0092070.691.69


[36] AT3G17440 is contained in a large block (Score 441.0, E-value 0.0) with 12 anchors
Export to pdf
Order within BlockLocus 1Annotation 1Locus 2Annotation 2KaKs
10AT3G17440CA12g209800.080.00
11AT3G17470CA12g209600.210.00
12AT3G17510CA12g209500.242.59


[11] AT3G17440 is contained in a large block (Score 1209.0, E-value 6e-37) with 32 anchors
Export to pdf
Order within BlockLocus 1Annotation 1Locus 2Annotation 2KaKs
23AT3G17340129610.351.60
24AT3G17350129580.320.00
25AT3G17430128660.142.15
26AT3G17440128550.112.90
27AT3G17470128500.281.90
28AT3G17510128410.222.88


[37] AT3G17440 is contained in a large block (Score 1199.0, E-value 3e-126) with 34 anchors
Export to pdf
Order within BlockLocus 1Annotation 1Locus 2Annotation 2KaKs
33AT3G17440NNU_016197-RA0.122.04


[38] AT3G17440 is contained in a small block (Score 337.0, E-value 2e-88) with 9 anchors
Export to pdf
Order within BlockLocus 1Annotation 1Locus 2Annotation 2KaKs
3AT3G17440Pbr037767.10.131.93
4AT3G17460Pbr037772.10.651.25
5AT3G17465Pbr037773.10.181.42


[39] AT3G17440 is contained in a small block (Score 343.0, E-value 0.0) with 9 anchors
Export to pdf
Order within BlockLocus 1Annotation 1Locus 2Annotation 2KaKs
1AT3G17390Pbr018549.10.081.44
2AT3G17440Pbr018557.10.121.83
3AT3G17470Pbr018566.10.263.35


[40] AT3G17440 is contained in a large block (Score 1664.0, E-value 5e-25) with 45 anchors
Export to pdf
Order within BlockLocus 1Annotation 1Locus 2Annotation 2KaKs
39AT3G17410Pm0084760.111.37
40AT3G17430Pm0084790.091.47
41AT3G17440Pm0084890.131.32
42AT3G17450Pm0084910.291.94
43AT3G17460Pm0084940.671.48
44AT3G17465Pm0084950.171.12
45AT3G17470Pm0084960.272.15



 Print this page