Locus Search
Obtain a report of related syntenic regions in multiple species by locus identifier
You can choose e.g.
AT1G25460,
GRMZM2G000039
ppa005930m
All intra/cross-species blocks for AT3G03580, graphs and tables display ±100kb region. Blue arrows are other anchor genes in the region, red is query locus.
[1] AT3G03580 is contained in a large block (Score 480.0, E-value 1e-128) with 14 anchors


[2] AT3G03580 is contained in a large block (Score 595.0, E-value 0.0) with 15 anchors


[3] AT3G03580 is contained in a huge block (Score 62910.0, E-value 1e-102) with 1586 anchors


[4] AT3G03580 is contained in a huge block (Score 44735.0, E-value 0.0) with 1137 anchors


[5] AT3G03580 is contained in a huge block (Score 60664.0, E-value 5e-105) with 1526 anchors



[1] AT3G03580 is contained in a large block (Score 480.0, E-value 1e-128) with 14 anchors


Order within Block | Locus 1 | Annotation 1 | Locus 2 | Annotation 2 | Ka | Ks |
4 | AT3G03580 | Gorai.007G249300 | 0.29 | 1.18 |
[2] AT3G03580 is contained in a large block (Score 595.0, E-value 0.0) with 15 anchors


Order within Block | Locus 1 | Annotation 1 | Locus 2 | Annotation 2 | Ka | Ks |
1 | AT3G03580 | Brara.E03491 | 0.19 | 0.80 | ||
2 | AT3G03590 | Brara.E03492 | 0.09 | 0.36 | ||
3 | AT3G03600 | Brara.E03493 | 0.05 | 0.96 | ||
4 | AT3G03610 | Brara.E03494 | 0.04 | 0.34 | ||
5 | AT3G03620 | Brara.E03495 | 0.06 | 0.39 | ||
6 | AT3G03650 | Brara.E03496 | 0.08 | 0.59 | ||
7 | AT3G03660 | Brara.E03497 | 0.07 | 0.23 | ||
8 | AT3G03700 | Brara.E03498 | 0.08 | 0.52 | ||
9 | AT3G03710 | Brara.E03499 | 0.04 | 0.36 | ||
10 | AT3G03720 | Brara.E03500 | 0.06 | 0.35 | ||
11 | AT3G03750 | Brara.E03501 | 0.14 | 0.68 | ||
12 | AT3G03770 | Brara.E03502 | 0.07 | 0.39 |
[3] AT3G03580 is contained in a huge block (Score 62910.0, E-value 1e-102) with 1586 anchors


Order within Block | Locus 1 | Annotation 1 | Locus 2 | Annotation 2 | Ka | Ks |
103 | 16040712 | AT3G03341 | 0.00 | 0.18 | ||
104 | 16042291 | AT3G03350 | 0.04 | 0.14 | ||
105 | 16057204 | AT3G03370 | 0.70 | 1.18 | ||
106 | 16037565 | AT3G03405 | 0.16 | 0.13 | ||
107 | 16050689 | AT3G03420 | 0.00 | 0.09 | ||
108 | 16034220 | AT3G03430 | 0.01 | 0.15 | ||
109 | 16061929 | AT3G03440 | 0.02 | 0.14 | ||
110 | 16060346 | AT3G03456 | 0.04 | 0.00 | ||
111 | 16034982 | AT3G03460 | 0.04 | 0.15 | ||
112 | 16039460 | AT3G03480 | 0.03 | 0.18 | ||
113 | 16049041 | AT3G03490 | 0.02 | 0.18 | ||
114 | 16066200 | AT3G03510 | 0.04 | 0.14 | ||
115 | 16047069 | AT3G03550 | 0.02 | 0.12 | ||
116 | 16052523 | AT3G03560 | 0.01 | 0.11 | ||
117 | 16052715 | AT3G03570 | 0.01 | 0.13 | ||
118 | 16061995 | AT3G03580 | 0.03 | 0.12 | ||
119 | 16034931 | AT3G03590 | 0.02 | 0.05 | ||
120 | 16043712 | AT3G03600 | 0.01 | 0.12 | ||
121 | 16038201 | AT3G03610 | 0.01 | 0.12 | ||
122 | 16055208 | AT3G03620 | 0.02 | 0.15 | ||
123 | 16039062 | AT3G03660 | 0.02 | 0.10 | ||
124 | 16046534 | AT3G03680 | 0.01 | 0.14 | ||
125 | 16062456 | AT3G03700 | 0.02 | 0.21 | ||
126 | 16055238 | AT3G03710 | 0.01 | 0.12 | ||
127 | 16064968 | AT3G03750 | 0.03 | 0.20 |
[4] AT3G03580 is contained in a huge block (Score 44735.0, E-value 0.0) with 1137 anchors


Order within Block | Locus 1 | Annotation 1 | Locus 2 | Annotation 2 | Ka | Ks |
113 | AT3G03300 | Bo5g150030 | 0.12 | 0.44 | ||
114 | AT3G03305 | Bo5g150020 | 0.08 | 0.76 | ||
115 | AT3G03310 | Bo5g150010 | 0.06 | 0.50 | ||
116 | AT3G03320 | Bo5g150000 | 0.12 | 0.40 | ||
117 | AT3G03330 | Bo5g149980 | 0.05 | 0.33 | ||
118 | AT3G03370 | Bo5g149970 | 0.73 | 1.64 | ||
119 | AT3G03420 | Bo5g149940 | 0.03 | 0.52 | ||
120 | AT3G03440 | Bo5g149930 | 0.04 | 0.49 | ||
121 | AT3G03480 | Bo5g149860 | 0.10 | 0.72 | ||
122 | AT3G03510 | Bo5g149850 | 0.13 | 0.44 | ||
123 | AT3G03580 | Bo5g148830 | 0.10 | 0.57 | ||
124 | AT3G03600 | Bo5g148810 | 0.04 | 1.03 | ||
125 | AT3G03620 | Bo5g148800 | 0.06 | 0.43 | ||
126 | AT3G03650 | Bo5g148790 | 0.08 | 0.60 | ||
127 | AT3G03660 | Bo5g148780 | 0.07 | 0.23 | ||
128 | AT3G03700 | Bo5g148770 | 0.07 | 0.50 | ||
129 | AT3G03710 | Bo5g148760 | 0.04 | 0.35 | ||
130 | AT3G03720 | Bo5g148750 | 0.12 | 0.34 | ||
131 | AT3G03750 | Bo5g148740 | 0.15 | 0.64 | ||
132 | AT3G03770 | Bo5g148730 | 0.07 | 0.43 | ||
133 | AT3G03780 | Bo5g148720 | 0.02 | 0.30 |
[5] AT3G03580 is contained in a huge block (Score 60664.0, E-value 5e-105) with 1526 anchors


