Locus Search

Obtain a report of related syntenic regions in multiple species by locus identifier
You can choose e.g. AT1G25460, GRMZM2G000039 ppa005930m



Display range :

All intra/cross-species blocks for AT1G80650, graphs and tables display ±100kb region. Blue arrows are other anchor genes in the region, red is query locus.

[1] AT1G80650 is contained in a large block (Score 687.0, E-value 0.0) with 18 anchors
Export to pdf
Order within BlockLocus 1Annotation 1Locus 2Annotation 2KaKs
7AT1G80540PGSC0003DMC4000248430.000.00
8AT1G80610PGSC0003DMC4000249780.553.43
9AT1G80630PGSC0003DMC4000248380.651.96
10AT1G80640PGSC0003DMC4000249700.372.32
11AT1G80650PGSC0003DMC4000249720.000.00
12AT1G80680PGSC0003DMC4000249670.373.19
13AT1G80690PGSC0003DMC4000248330.261.49
14AT1G80700PGSC0003DMC4000249640.551.53
15AT1G80720PGSC0003DMC4000249630.331.92
16AT1G80730PGSC0003DMC4000248310.000.00
17AT1G80750PGSC0003DMC4000249620.382.25


[2] AT1G80650 is contained in a large block (Score 434.0, E-value 1e-154) with 11 anchors
Export to pdf
Order within BlockLocus 1Annotation 1Locus 2Annotation 2KaKs
1AT1G8063029588.m000879 protein, putative0.411.82
2AT1G8064029588.m000877 kinase PBS1, putative0.262.06
3AT1G8065029588.m000875 RNA binding protein, putative0.593.47
4AT1G8067029588.m000872 poly(A)+ RNA export protein, putative0.121.93
5AT1G8068029588.m000871 putative0.271.54
6AT1G8070029588.m000868 hypothetical protein0.411.56
7AT1G8072029588.m000867 hypothetical protein0.271.80
8AT1G8075029588.m000863 ribosomal protein L7, putative0.290.00


[3] AT1G80650 is contained in a large block (Score 444.0, E-value 9e-23) with 13 anchors
Export to pdf
Order within BlockLocus 1Annotation 1Locus 2Annotation 2KaKs
10AT1G80650Phvul.005G1808000.722.46
11AT1G80820Phvul.005G1821000.212.22


[4] AT1G80650 is contained in a large block (Score 946.0, E-value 1e-126) with 25 anchors
Export to pdf
Order within BlockLocus 1Annotation 1Locus 2Annotation 2KaKs
9AT1G80580ppa020928m0.662.39
10AT1G80610ppa021100m0.582.16
11AT1G80620ppa005542m0.422.48
12AT1G80630ppa003687m0.543.44
13AT1G80640ppa018107m0.342.39
14AT1G80650ppa018436m0.452.04
15AT1G80720ppa021707m0.261.48


[5] AT1G80650 is contained in a large block (Score 845.0, E-value 2e-180) with 23 anchors
Export to pdf
Order within BlockLocus 1Annotation 1Locus 2Annotation 2KaKs
10AT1G80520Eucgr.J030880.370.00
11AT1G80570Eucgr.J030910.220.00
12AT1G80650Eucgr.J030930.662.36
13AT1G80670Eucgr.J030970.120.00
14AT1G80700Eucgr.J031000.512.06
15AT1G80750Eucgr.J031021.520.00


[7] AT1G80650 is contained in a large block (Score 1071.0, E-value 0.0) with 27 anchors
Export to pdf
Order within BlockLocus 1Annotation 1Locus 2Annotation 2KaKs
4AT1G80555Brara.B024130.391.67
5AT1G80570Brara.B024110.090.50
6AT1G80580Brara.B024100.190.52
7AT1G80590Brara.B024070.431.03
8AT1G80600Brara.B024060.050.48
9AT1G80610Brara.B024050.080.46
10AT1G80620Brara.B024040.170.68
11AT1G80640Brara.B024030.060.41
12AT1G80650Brara.B024020.240.46
13AT1G80670Brara.B024010.020.54
14AT1G80680Brara.B024000.090.30
15AT1G80730Brara.B023980.100.31
16AT1G80750Brara.B023970.070.46
17AT1G80760Brara.B023960.020.35
18AT1G80780Brara.B023930.040.62
19AT1G80820Brara.B023920.010.37
20AT1G80830Brara.B023910.050.38
21AT1G80840Brara.B023900.050.40


[8] AT1G80650 is contained in a large block (Score 738.0, E-value 7e-97) with 19 anchors
Export to pdf
Order within BlockLocus 1Annotation 1Locus 2Annotation 2KaKs
1AT1G80620Potri.003G1788000.423.72
2AT1G80630Potri.003G1791000.402.00
3AT1G80640Potri.003G1795000.311.82
4AT1G80650Potri.003G1797000.682.09
5AT1G80670Potri.003G1800000.131.96
6AT1G80680Potri.003G1801000.271.39
7AT1G80690Potri.003G1804000.161.62
8AT1G80700Potri.003G1805000.431.56
9AT1G80730Potri.003G1806000.493.77
10AT1G80750Potri.003G1807000.000.00
11AT1G80790Potri.003G1810000.352.42


[9] AT1G80650 is contained in a large block (Score 469.0, E-value 2e-08) with 13 anchors
Export to pdf
Order within BlockLocus 1Annotation 1Locus 2Annotation 2KaKs
7AT1G80570Medtr2g1047600.220.00
8AT1G80610Medtr2g1047701.042.66
9AT1G80640Medtr2g1047900.351.50
10AT1G80650Medtr2g1048100.941.59
11AT1G80760Medtr2g1049400.172.45


[10] AT1G80650 is contained in a large block (Score 588.0, E-value 0.0) with 15 anchors
Export to pdf
Order within BlockLocus 1Annotation 1Locus 2Annotation 2KaKs
3AT1G80520Glyma.15G0058000.332.28
4AT1G80555Glyma.15G0054000.571.53
5AT1G80570Glyma.15G0049000.214.95
6AT1G80610Glyma.15G0048000.371.45
7AT1G80640Glyma.15G0047000.341.87
8AT1G80650Glyma.15G0045000.650.00
9AT1G80730Glyma.15G0041000.560.00
10AT1G80760Glyma.15G0039000.153.79
11AT1G80830Glyma.15G0035000.131.78


[11] AT1G80650 is contained in a huge block (Score 3783.0, E-value 7e-17) with 95 anchors
Export to pdf
Order within BlockLocus 1Annotation 1Locus 2Annotation 2KaKs
1116048047AT1G808600.010.15
1216060177AT1G808500.030.15
1316045839AT1G808400.020.13
1416049091AT1G807900.330.59
1516056399AT1G807500.010.12
1616061759AT1G807450.040.13
1716055194AT1G807400.070.31
1816064307AT1G807300.030.16
1916060009AT1G807200.020.08
2016042592AT1G807100.040.14
2116040327AT1G807000.030.11
2216059278AT1G806900.010.16
2316042479AT1G806800.030.10
2416038654AT1G806700.010.12
2516039173AT1G806500.080.16
2616049035AT1G806400.020.12
2716033821AT1G806300.030.15
2816056219AT1G806200.070.20
2916054839AT1G806100.030.10
3016042424AT1G806000.010.10
3116050904AT1G805800.100.20
3216041609AT1G805550.402.05
3316059699AT1G805500.020.12
3416055146AT1G805400.030.19
3516054015AT1G805200.030.23
3616064264AT1G805100.010.13
3716040345AT1G805000.000.18
3816065305AT1G804800.020.17
3916060654AT1G804600.010.19
4016034870AT1G804500.020.13
4116058449AT1G804400.050.17


[12] AT1G80650 is contained in a large block (Score 1203.0, E-value 1e-87) with 32 anchors
Export to pdf
Order within BlockLocus 1Annotation 1Locus 2Annotation 2KaKs
15AT1G80640Thecc1EG0273840.281.66
16AT1G80650Thecc1EG0273890.520.00
17AT1G80670Thecc1EG0273950.193.28
18AT1G80680Thecc1EG0273960.241.27


[13] AT1G80650 is contained in a huge block (Score 3510.0, E-value 5e-72) with 88 anchors
Export to pdf
Order within BlockLocus 1Annotation 1Locus 2Annotation 2KaKs
48AT1G80400Carubv10022012m0.050.32
49AT1G80410Carubv10021530m0.020.22
50AT1G80420Carubv10020512m0.090.29
51AT1G80440Carubv10020583m0.090.42
52AT1G80450Carubv10020938m0.050.45
53AT1G80460Carubv10020141m0.020.32
54AT1G80480Carubv10020280m0.040.27
55AT1G80510Carubv10021871m0.030.31
56AT1G80520Carubv10020992m0.120.65
57AT1G80540Carubv10020121m0.030.32
58AT1G80550Carubv10020295m0.050.29
59AT1G80555Carubv10021490m0.411.60
60AT1G80570Carubv10020197m0.080.43
61AT1G80580Carubv10022119m0.220.37
62AT1G80600Carubv10020266m0.030.24
63AT1G80610Carubv10020966m0.050.25
64AT1G80620Carubv10020315m0.100.33
65AT1G80640Carubv10020332m0.030.26
66AT1G80650Carubv10022086m0.160.27
67AT1G80670Carubv10020569m0.010.27
68AT1G80680Carubv10019705m0.050.21
69AT1G80690Carubv10020909m0.020.27
70AT1G80700Carubv10020936m0.090.23
71AT1G80710Carubv10020154m0.100.27
72AT1G80720Carubv10020805m0.050.19
73AT1G80730Carubv10020911m0.060.21
74AT1G80740Carubv10019805m0.130.61
75AT1G80745Carubv10021566m0.080.21
76AT1G80750Carubv10020853m0.030.22
77AT1G80790Carubv10019950m0.080.20
78AT1G80810Carubv10022426m0.090.23
79AT1G80840Carubv10020726m0.040.35
80AT1G80850Carubv10020671m0.040.33
81AT1G80860Carubv10021063m0.030.28
82AT1G80870Carubv10022387m0.040.28
83AT1G80880Carubv10020130m0.060.20
84AT1G80910Carubv10022374m0.030.20
85AT1G80920Carubv10021065m0.000.27


[14] AT1G80650 is contained in a small block (Score 231.0, E-value 0.0) with 6 anchors
Export to pdf
Order within BlockLocus 1Annotation 1Locus 2Annotation 2KaKs
3AT1G80520Cla0127380.411.76
4AT1G80555Cla0127340.461.92
5AT1G80620Cla0127330.442.63
6AT1G80650Cla0127300.760.00


[6] AT1G80650 is contained in a large block (Score 463.0, E-value 0.0) with 12 anchors
Export to pdf
Order within BlockLocus 1Annotation 1Locus 2Annotation 2KaKs
3AT1G805501330540.381.88
4AT1G805551330420.551.41
5AT1G805701330200.212.90
6AT1G806101330150.891.31
7AT1G806401330020.341.62
8AT1G806501329950.622.07
9AT1G808201329590.233.07
10AT1G808401329400.371.76


[15] AT1G80650 is contained in a large block (Score 909.0, E-value 0.0) with 24 anchors
Export to pdf
Order within BlockLocus 1Annotation 1Locus 2Annotation 2KaKs
5AT1G80580Pm0137340.622.22
6AT1G80610Pm0137400.411.42
7AT1G80620Pm0137410.432.46
8AT1G80630Pm0137420.520.00
9AT1G80640Pm0137440.352.73
10AT1G80650Pm0137490.642.41
11AT1G80720Pm0137570.261.57



 Print this page