Locus Search

Obtain a report of related syntenic regions in multiple species by locus identifier
You can choose e.g. AT1G25460, GRMZM2G000039 ppa005930m



Display range :

All intra/cross-species blocks for AT1G77610, graphs and tables display ±100kb region. Blue arrows are other anchor genes in the region, red is query locus.

[1] AT1G77610 is contained in a huge block (Score 7500.0, E-value 0.0) with 193 anchors
Export to pdf
Order within BlockLocus 1Annotation 1Locus 2Annotation 2KaKs
162AT1G21695AT1G774000.571.05
163AT1G21720AT1G774400.020.85
164AT1G21740AT1G775000.190.90
165AT1G21750AT1G775100.110.61
166AT1G21770AT1G775400.170.47
167AT1G21810AT1G775800.290.94
168AT1G21870AT1G776100.040.66
169AT1G21880AT1G776300.160.79
170AT1G21910AT1G776400.220.95
171AT1G21920AT1G776600.150.86
172AT1G21980AT1G777400.080.86
173AT1G22015AT1G778100.160.89


[2] AT1G77610 is contained in a huge block (Score 2192.0, E-value 2e-146) with 57 anchors
Export to pdf
Order within BlockLocus 1Annotation 1Locus 2Annotation 2KaKs
21AT1G77600GSVIVT010088760010.411.39
22AT1G77610GSVIVT010088780010.071.69
23AT1G77620GSVIVT010088800010.521.19
24AT1G77630GSVIVT010088820010.301.74


[3] AT1G77610 is contained in a large block (Score 819.0, E-value 3e-21) with 22 anchors
Export to pdf
Order within BlockLocus 1Annotation 1Locus 2Annotation 2KaKs
11AT1G77580Phvul.009G1252000.522.37
12AT1G77610Phvul.009G1247000.063.33
13AT1G77620Phvul.009G1245000.711.89
14AT1G77630Phvul.009G1244000.342.40


[4] AT1G77610 is contained in a huge block (Score 2430.0, E-value 9e-71) with 64 anchors
Export to pdf
Order within BlockLocus 1Annotation 1Locus 2Annotation 2KaKs
23AT1G77600ppa021477m0.401.32
24AT1G77610ppa008225m0.091.38
25AT1G77620ppa024100m0.561.39
26AT1G77630ppa006147m0.342.11
27AT1G77640ppa010649m0.420.00


[5] AT1G77610 is contained in a large block (Score 1260.0, E-value 9e-70) with 35 anchors
Export to pdf
Order within BlockLocus 1Annotation 1Locus 2Annotation 2KaKs
11AT1G77580Gorai.009G2459000.000.00
12AT1G77610Gorai.009G2454000.071.49
13AT1G77640Gorai.009G2445000.441.97


[6] AT1G77610 is contained in a large block (Score 814.0, E-value 5e-21) with 23 anchors
Export to pdf
Order within BlockLocus 1Annotation 1Locus 2Annotation 2KaKs
11AT1G77610Gorai.005G0899000.052.06


[7] AT1G77610 is contained in a large block (Score 1079.0, E-value 3e-63) with 28 anchors
Export to pdf
Order within BlockLocus 1Annotation 1Locus 2Annotation 2KaKs
9AT1G77540Eucgr.F037930.292.15
10AT1G77600Eucgr.F037870.482.03
11AT1G77610Eucgr.F037840.071.95
12AT1G77620Eucgr.F037820.762.10
13AT1G77630Eucgr.F037810.333.00


[8] AT1G77610 is contained in a small block (Score 302.0, E-value 2e-173) with 8 anchors
Export to pdf
Order within BlockLocus 1Annotation 1Locus 2Annotation 2KaKs
6AT1G77590169618470.161.68
7AT1G77610169618520.092.14
8AT1G77620169618570.731.85


[9] AT1G77610 is contained in a small block (Score 300.0, E-value 0.0) with 8 anchors
Export to pdf
Order within BlockLocus 1Annotation 1Locus 2Annotation 2KaKs
2AT1G77580C.cajan_013150.512.21
3AT1G77590C.cajan_013190.201.58
4AT1G77610C.cajan_013210.072.96
5AT1G77620C.cajan_013270.691.82
6AT1G77630C.cajan_013280.302.07


[12] AT1G77610 is contained in a huge block (Score 2547.0, E-value 1e-75) with 68 anchors
Export to pdf
Order within BlockLocus 1Annotation 1Locus 2Annotation 2KaKs
56AT1G77350Brara.H022740.080.58
57AT1G77440Brara.H022710.030.79
58AT1G77510Brara.H022690.120.62
59AT1G77610Brara.H022670.050.85
60AT1G77630Brara.H022660.161.26
61AT1G77640Brara.H022640.200.97
62AT1G77660Brara.H022630.161.09


[13] AT1G77610 is contained in a huge block (Score 11868.0, E-value 9e-82) with 306 anchors
Export to pdf
Order within BlockLocus 1Annotation 1Locus 2Annotation 2KaKs
278AT1G77420Brara.G021490.190.54
279AT1G77460Brara.G021480.040.27
280AT1G77470Brara.G021470.050.40
281AT1G77540Brara.G021430.120.61
282AT1G77590Brara.G021420.040.56
283AT1G77610Brara.G021410.020.57
284AT1G77660Brara.G021370.240.61
285AT1G77670Brara.G021360.090.96
286AT1G77690Brara.G021350.020.44
287AT1G77700Brara.G021340.230.59
288AT1G77710Brara.G021330.020.44
289AT1G77720Brara.G021320.120.49
290AT1G77760Brara.G021310.030.59
291AT1G77770Brara.G021300.100.57


[14] AT1G77610 is contained in a huge block (Score 11071.0, E-value 0.0) with 279 anchors
Export to pdf
Order within BlockLocus 1Annotation 1Locus 2Annotation 2KaKs
159AT1G77390Brara.G035150.110.39
160AT1G77400Brara.G035160.100.52
161AT1G77480Brara.G035170.110.74
162AT1G77490Brara.G035180.090.53
163AT1G77500Brara.G035190.190.72
164AT1G77510Brara.G035210.090.42
165AT1G77580Brara.G035230.180.71
166AT1G77610Brara.G035240.010.66
167AT1G77620Brara.G035250.140.40
168AT1G77640Brara.G035260.090.41
169AT1G77700Brara.G035270.160.55
170AT1G77720Brara.G035280.110.43
171AT1G77750Brara.G035290.050.49
172AT1G77760Brara.G035300.070.82
173AT1G77765Brara.G035310.250.54
174AT1G77770Brara.G035320.080.62
175AT1G77800Brara.G035330.100.44


[15] AT1G77610 is contained in a large block (Score 541.0, E-value 0.0) with 14 anchors
Export to pdf
Order within BlockLocus 1Annotation 1Locus 2Annotation 2KaKs
1AT1G77600evm.TU.supercontig_36.580.291.26
2AT1G77610evm.TU.supercontig_36.550.051.61
3AT1G77620evm.TU.supercontig_36.530.501.35
4AT1G77630evm.TU.supercontig_36.520.271.83


[16] AT1G77610 is contained in a huge block (Score 1990.0, E-value 0.0) with 53 anchors
Export to pdf
Order within BlockLocus 1Annotation 1Locus 2Annotation 2KaKs
22AT1G77610Potri.005G1772000.071.71
23AT1G77620Potri.005G1770000.501.35
24AT1G77630Potri.005G1767000.281.70


[17] AT1G77610 is contained in a huge block (Score 2310.0, E-value 1e-23) with 61 anchors
Export to pdf
Order within BlockLocus 1Annotation 1Locus 2Annotation 2KaKs
23AT1G77580Potri.002G0834000.432.02
24AT1G77600Potri.002G0843000.411.42
25AT1G77610Potri.002G0845000.071.70
26AT1G77620Potri.002G0847000.541.60
27AT1G77630Potri.002G0848000.301.73
28AT1G77640Potri.002G0856000.393.00


[18] AT1G77610 is contained in a large block (Score 1244.0, E-value 4e-21) with 33 anchors
Export to pdf
Order within BlockLocus 1Annotation 1Locus 2Annotation 2KaKs
21AT1G77600mrna111690.451.81
22AT1G77610mrna111670.111.74
23AT1G77620mrna111640.661.58
24AT1G77630mrna111610.242.29
25AT1G77640mrna111450.490.00


[19] AT1G77610 is contained in a large block (Score 1014.0, E-value 0.0) with 27 anchors
Export to pdf
Order within BlockLocus 1Annotation 1Locus 2Annotation 2KaKs
1AT1G77610Medtr3g0723800.071.89
2AT1G77620Medtr3g0724000.612.07
3AT1G77630Medtr3g0724100.331.81


[20] AT1G77610 is contained in a small block (Score 267.0, E-value 2e-113) with 8 anchors
Export to pdf
Order within BlockLocus 1Annotation 1Locus 2Annotation 2KaKs
6AT1G77580Medtr1g0300100.473.42
7AT1G77610Medtr1g0303200.062.05
8AT1G77620Medtr1g0304100.731.57


[21] AT1G77610 is contained in a large block (Score 795.0, E-value 0.0) with 21 anchors
Export to pdf
Order within BlockLocus 1Annotation 1Locus 2Annotation 2KaKs
17AT1G77600Glyma.14G1491000.461.64
18AT1G77610Glyma.14G1489000.062.40
19AT1G77620Glyma.14G1487000.741.49


[22] AT1G77610 is contained in a large block (Score 1033.0, E-value 0.0) with 27 anchors
Export to pdf
Order within BlockLocus 1Annotation 1Locus 2Annotation 2KaKs
3AT1G77590Glyma.13G0799000.171.51
4AT1G77600Glyma.13G0803000.532.07
5AT1G77610Glyma.13G0804000.063.86
6AT1G77620Glyma.13G0806000.461.74
7AT1G77630Glyma.13G0807000.361.82


[23] AT1G77610 is contained in a large block (Score 1716.0, E-value 3e-22) with 45 anchors
Export to pdf
Order within BlockLocus 1Annotation 1Locus 2Annotation 2KaKs
12AT1G77580Glyma.06G1133000.501.84
13AT1G77590Glyma.06G1129000.201.63
14AT1G77610Glyma.06G1128000.062.14
15AT1G77620Glyma.06G1126000.681.89
16AT1G77630Glyma.06G1125000.361.61


[24] AT1G77610 is contained in a large block (Score 1059.0, E-value 7e-23) with 28 anchors
Export to pdf
Order within BlockLocus 1Annotation 1Locus 2Annotation 2KaKs
12AT1G77580Glyma.04G2496000.512.24
13AT1G77610Glyma.04G2500000.062.21
14AT1G77620Glyma.04G2502000.631.81
15AT1G77630Glyma.04G2503000.341.77


[25] AT1G77610 is contained in a huge block (Score 36370.0, E-value 1e-12) with 918 anchors
Export to pdf
Order within BlockLocus 1Annotation 1Locus 2Annotation 2KaKs
77816056682AT1G774000.020.15
77916053905AT1G774050.020.17
78016065125AT1G774400.000.14
78116054543AT1G774500.020.21
78216038907AT1G774600.010.08
78316038049AT1G774700.030.16
78416053230AT1G774800.040.09
78516035439AT1G774900.020.16
78616041620AT1G775000.030.15
78716048637AT1G775100.020.12
78816050741AT1G775250.140.14
78916066094AT1G775400.020.13
79016052775AT1G775500.030.16
79116051729AT1G775800.040.16
79216041213AT1G776000.040.13
79316064826AT1G776100.100.25
79416055213AT1G776200.040.12
79516053372AT1G776300.020.16
79616037711AT1G776400.040.09
79716050935AT1G776600.210.35
79816049310AT1G776700.020.18
79916042038AT1G776800.030.14
80016041991AT1G776820.050.15
80116050846AT1G776900.030.15
80216039814AT1G777100.000.06
80316060914AT1G777200.030.13
80416053710AT1G777500.010.09
80516043588AT1G777600.010.19
80616050899AT1G777650.130.17
80716055703AT1G777700.010.19
80816041511AT1G778000.030.07


[26] AT1G77610 is contained in a huge block (Score 4600.0, E-value 0.0) with 122 anchors
Export to pdf
Order within BlockLocus 1Annotation 1Locus 2Annotation 2KaKs
10516045233AT1G774400.030.90
10616061233AT1G775000.180.87
10716064773AT1G775100.120.67
10816056148AT1G775400.170.55
10916035503AT1G776100.040.61
11016040962AT1G776300.150.79
11116046387AT1G776400.230.86
11216037597AT1G776600.140.76


[27] AT1G77610 is contained in a huge block (Score 2617.0, E-value 2e-20) with 69 anchors
Export to pdf
Order within BlockLocus 1Annotation 1Locus 2Annotation 2KaKs
24AT1G77600Thecc1EG0351100.391.38
25AT1G77610Thecc1EG0351020.061.79
26AT1G77620Thecc1EG0351000.491.27
27AT1G77630Thecc1EG0350990.291.51


[28] AT1G77610 is contained in a huge block (Score 3184.0, E-value 0.0) with 86 anchors
Export to pdf
Order within BlockLocus 1Annotation 1Locus 2Annotation 2KaKs
74AT1G77440Bo8g0710200.020.88
75AT1G77510Bo8g0710600.120.65
76AT1G77610Bo8g0711200.050.83
77AT1G77630Bo8g0711300.171.25
78AT1G77640Bo8g0711500.200.96
79AT1G77660Bo8g0711900.161.00


[29] AT1G77610 is contained in a huge block (Score 36937.0, E-value 1e-122) with 931 anchors
Export to pdf
Order within BlockLocus 1Annotation 1Locus 2Annotation 2KaKs
788AT1G77370Carubv10021140m0.050.24
789AT1G77400Carubv10020878m0.050.27
790AT1G77405Carubv10020312m0.040.33
791AT1G77440Carubv10020962m0.010.29
792AT1G77460Carubv10019648m0.020.16
793AT1G77470Carubv10020461m0.050.21
794AT1G77480Carubv10020249m0.060.21
795AT1G77490Carubv10020327m0.040.27
796AT1G77500Carubv10019768m0.070.29
797AT1G77510Carubv10020120m0.040.37
798AT1G77540Carubv10021197m0.070.31
799AT1G77550Carubv10019785m0.030.23
800AT1G77570Carubv10021131m0.310.45
801AT1G77580Carubv10019865m0.060.30
802AT1G77600Carubv10022229m0.050.20
803AT1G77610Carubv10020616m0.010.27
804AT1G77620Carubv10019687m0.080.22
805AT1G77630Carubv10020344m0.040.30
806AT1G77640Carubv10020777m0.080.27
807AT1G77660Carubv10020354m0.030.27
808AT1G77670Carubv10020303m0.040.35
809AT1G77680Carubv10019702m0.070.24
810AT1G77690Carubv10020229m0.010.31
811AT1G77710Carubv10021217m0.010.27
812AT1G77720Carubv10019825m0.060.21
813AT1G77730Carubv10021554m0.050.41
814AT1G77750Carubv10021089m0.030.21
815AT1G77760Carubv10019732m0.020.36
816AT1G77765Carubv10021563m0.220.41
817AT1G77770Carubv10020692m0.030.31
818AT1G77790Carubv10021473m0.110.48
819AT1G77800Carubv10019659m0.060.20


[30] AT1G77610 is contained in a huge block (Score 4860.0, E-value 0.0) with 128 anchors
Export to pdf
Order within BlockLocus 1Annotation 1Locus 2Annotation 2KaKs
110AT1G77440Carubv10010099m0.020.87
111AT1G77500Carubv10008218m0.200.90
112AT1G77510Carubv10008920m0.120.63
113AT1G77540Carubv10010702m0.160.41
114AT1G77580Carubv10008676m0.391.00
115AT1G77610Carubv10010023m0.030.64
116AT1G77630Carubv10009262m0.160.84
117AT1G77640Carubv10010179m0.270.94
118AT1G77660Carubv10009218m0.141.05


[31] AT1G77610 is contained in a huge block (Score 2444.0, E-value 3e-74) with 63 anchors
Export to pdf
Order within BlockLocus 1Annotation 1Locus 2Annotation 2KaKs
21AT1G77580orange1.1g008775m0.562.17
22AT1G77600orange1.1g035990m0.401.69
23AT1G77610orange1.1g019514m0.061.44
24AT1G77620orange1.1g005137m0.631.76
25AT1G77630orange1.1g014940m0.311.56


[32] AT1G77610 is contained in a large block (Score 611.0, E-value 4e-145) with 16 anchors
Export to pdf
Order within BlockLocus 1Annotation 1Locus 2Annotation 2KaKs
10AT1G77540Cla0231650.291.93
11AT1G77610Cla0231630.092.00
12AT1G77620Cla0231610.651.70
13AT1G77640Cla0231580.480.00
14AT1G77660Cla0231550.332.36
15AT1G77670Cla0231540.120.00


[10] AT1G77610 is contained in a large block (Score 893.0, E-value 0.0) with 23 anchors
Export to pdf
Order within BlockLocus 1Annotation 1Locus 2Annotation 2KaKs
1AT1G77610608060.072.83
2AT1G77620608160.641.86
3AT1G77630608330.341.52


[11] AT1G77610 is contained in a small block (Score 276.0, E-value 3e-118) with 8 anchors
Export to pdf
Order within BlockLocus 1Annotation 1Locus 2Annotation 2KaKs
6AT1G77580909570.592.79
7AT1G77610909100.061.77
8AT1G77620908940.691.39


[33] AT1G77610 is contained in a large block (Score 683.0, E-value 1e-98) with 19 anchors
Export to pdf
Order within BlockLocus 1Annotation 1Locus 2Annotation 2KaKs
8AT1G77610NNU_018383-RA0.081.86


[34] AT1G77610 is contained in a large block (Score 1037.0, E-value 1e-71) with 27 anchors
Export to pdf
Order within BlockLocus 1Annotation 1Locus 2Annotation 2KaKs
24AT1G77600Pm0048090.381.52
25AT1G77610Pm0048130.091.38
26AT1G77620Pm0048150.621.38
27AT1G77630Pm0048170.321.77



 Print this page