Locus Search

Obtain a report of related syntenic regions in multiple species by locus identifier
You can choose e.g. AT1G25460, GRMZM2G000039 ppa005930m



Display range :

All intra/cross-species blocks for AT1G67520, graphs and tables display ±100kb region. Blue arrows are other anchor genes in the region, red is query locus.

[1] AT1G67520 is contained in a huge block (Score 36370.0, E-value 1e-12) with 918 anchors
Export to pdf
Order within BlockLocus 1Annotation 1Locus 2Annotation 2KaKs
10816034238AT1G674000.020.23
10916041362AT1G674200.020.11
11016040127AT1G674300.000.08
11116060343AT1G674400.020.17
11216057609AT1G674800.020.20
11316036789AT1G674900.020.14
11416052255AT1G675000.040.12
11516035027AT1G675200.090.15
11616057092AT1G675300.020.13
11716038703AT1G675400.030.24
11816033866AT1G675500.010.18
11916056066AT1G675700.020.23
12016044658AT1G675900.020.17
12116060582AT1G676000.030.15
12216059647AT1G676200.020.15
12316050175AT1G676230.170.17
12416050109AT1G676300.020.13


[2] AT1G67520 is contained in a huge block (Score 36937.0, E-value 1e-122) with 931 anchors
Export to pdf
Order within BlockLocus 1Annotation 1Locus 2Annotation 2KaKs
122AT1G67340Carubv10020405m0.050.33
123AT1G67350Carubv10021120m0.030.47
124AT1G67360Carubv10020865m0.080.38
125AT1G67370Carubv10020063m0.030.22
126AT1G67390Carubv10021778m0.310.50
127AT1G67400Carubv10020755m0.020.40
128AT1G67420Carubv10021635m0.040.21
129AT1G67430Carubv10021005m0.000.15
130AT1G67440Carubv10022410m0.020.34
131AT1G67450Carubv10022243m0.350.53
132AT1G67480Carubv10020480m0.030.33
133AT1G67490Carubv10019760m0.030.24
134AT1G67500Carubv10019649m0.050.17
135AT1G67520Carubv10019886m0.120.30
136AT1G67530Carubv10019833m0.030.27
137AT1G67540Carubv10021801m0.100.39
138AT1G67550Carubv10021273m0.030.25
139AT1G67570Carubv10021714m0.030.40
140AT1G67590Carubv10020561m0.030.44
141AT1G67600Carubv10021043m0.040.23
142AT1G67620Carubv10020997m0.070.31
143AT1G67623Carubv10021793m0.280.41
144AT1G67630Carubv10019947m0.030.21
145AT1G67650Carubv10020124m0.090.21
146AT1G67660Carubv10020372m0.050.29
147AT1G67690Carubv10019853m0.020.13
148AT1G67700Carubv10020893m0.010.28
149AT1G67710Carubv10020133m0.030.28



 Print this page