Locus Search

Obtain a report of related syntenic regions in multiple species by locus identifier
You can choose e.g. AT1G25460, GRMZM2G000039 ppa005930m



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All intra/cross-species blocks for AT1G34760, graphs and tables display ±100kb region. Blue arrows are other anchor genes in the region, red is query locus.

[1] AT1G34760 is contained in a small block (Score 247.0, E-value 1e-150) with 7 anchors
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Order within BlockLocus 1Annotation 1Locus 2Annotation 2KaKs
1AT1G22280AT1G347500.171.94
2AT1G22290AT1G347600.362.29


[2] AT1G34760 is contained in a large block (Score 407.0, E-value 2e-174) with 11 anchors
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Order within BlockLocus 1Annotation 1Locus 2Annotation 2KaKs
2AT1G3463029908.m006029 hypothetical protein0.212.04
3AT1G3464029908.m006030 hypothetical protein0.301.92
4AT1G3476029908.m006038 protein, putative0.110.00
5AT1G3477029908.m006039 antigen G1, putative0.251.83
6AT1G3478029908.m006040 hypothetical protein0.321.79


[3] AT1G34760 is contained in a small block (Score 328.0, E-value 0.0) with 9 anchors
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Order within BlockLocus 1Annotation 1Locus 2Annotation 2KaKs
6AT1G34760mrna286590.190.00
7AT1G34770mrna286600.301.67
8AT1G34780mrna286610.361.32


[4] AT1G34760 is contained in a small block (Score 213.0, E-value 2e-28) with 6 anchors
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Order within BlockLocus 1Annotation 1Locus 2Annotation 2KaKs
3scaffold00038.149AT1G347600.170.00
4scaffold00038.151AT1G347700.322.34
5scaffold00038.152AT1G347800.541.82


[5] AT1G34760 is contained in a large block (Score 1850.0, E-value 6e-135) with 49 anchors
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Order within BlockLocus 1Annotation 1Locus 2Annotation 2KaKs
44AT1G34630Bo6g0440900.090.52
45AT1G34760Bo6g0440200.120.82
46AT1G34790Bo6g0440100.090.57



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